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Series GSE76065 Query DataSets for GSE76065
Status Public on Dec 17, 2015
Title Rader HHDL genotyping
Organism Homo sapiens
Experiment type SNP genotyping by SNP array
Summary The presence of a coding variant affecting plasma high density lipoprotein cholesterol (HDLC) levels was evaluated in subjects with elevated plasma levels of HDLC.
Overall design 18 DNA samples from subjects with high plasma HDLC levels were analyzed. The samples were analyzed using the exome chip in three separate phases, with different samples in each phase. The same genotyping platform was used for each of the phases of the experiment under the same experimental conditions. Because different samples were run in different phases, raw intensity data was collected separately for each phase and genotypes were called separately for each phase. Raw intensity data is provided thus separately for the subjects by phase of genotyping. The experimental phase of each subject is also provided.
Contributor(s) Rader D, Zanoni P, Khetarpal S
Citation(s) 26965621
Submission date Dec 16, 2015
Last update date Mar 17, 2016
Contact name Daniel J Rader
Organization name University of Pennsylvania
Street address 3400 Civic Center Blvd
City Philadelphia
State/province Pennsylvania
ZIP/Postal code 19104
Country USA
Platforms (1)
GPL18544 Illumina HumanExome-12 v1.0 BeadChip
Samples (18)
GSM1973585 HHDL0217
GSM1973586 CCS2194
GSM1973587 HHDL0099
BioProject PRJNA306141

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE76065_RAW.tar 25.5 Mb (http)(custom) TAR
GSE76065_genotyping_processed_data_matrix.csv.gz 1.4 Mb (ftp)(http) CSV
GSE76065_genotyping_raw_Phase_1.txt.gz 62.2 Mb (ftp)(http) TXT
GSE76065_genotyping_raw_Phase_2.txt.gz 61.5 Mb (ftp)(http) TXT
GSE76065_genotyping_raw_Phase_3.txt.gz 47.3 Mb (ftp)(http) TXT
Processed data are available on Series record

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