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Status
Public on Nov 05, 2014
Title
Agilent-021850 SurePrint G3 Human CGH Microarray (Probe Name version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL9777.
Submission date
Nov 05, 2014
Last update date
Nov 05, 2014
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (286)
GSM533189 , GSM533190 , GSM533191 , GSM533192 , GSM533193 , GSM533194
GSM533195 ,
GSM533196 ,
GSM533197 ,
GSM533198 ,
GSM533199 ,
GSM533200 ,
GSM543651 ,
GSM543652 ,
GSM1537969 ,
GSM1537970 ,
GSM1537971 ,
GSM1702000 ,
GSM1702001 ,
GSM1715564 ,
GSM1715565 ,
GSM1850233 ,
GSM1850234 ,
GSM1850235 ,
GSM1850236 ,
GSM1850237 ,
GSM1850238 ,
GSM1850239 ,
GSM2051493 ,
GSM2051494 ,
GSM2051495 ,
GSM2051496 ,
GSM2051497 ,
GSM2051498 ,
GSM2051499 ,
GSM2051500 ,
GSM2051501 ,
GSM2051502 ,
GSM2051503 ,
GSM2051504 ,
GSM2051505 ,
GSM2051506 ,
GSM2051507 ,
GSM2051508 ,
GSM2051509 ,
GSM2051510 ,
GSM2051511 ,
GSM2051512 ,
GSM2051513 ,
GSM2878320 ,
GSM2878321 ,
GSM2878322 ,
GSM2878323 ,
GSM2878324 ,
GSM2878325 ,
GSM2878326 ,
GSM2878327 ,
GSM2878328 ,
GSM2878329 ,
GSM2878330 ,
GSM2878331 ,
GSM2878332 ,
GSM2878333 ,
GSM2878334 ,
GSM2878335 ,
GSM2878336 ,
GSM2878337 ,
GSM2878338 ,
GSM2878339 ,
GSM2878340 ,
GSM2878341 ,
GSM2878342 ,
GSM2878343 ,
GSM2878344 ,
GSM2878345 ,
GSM2878346 ,
GSM2878347 ,
GSM2878348 ,
GSM2878349 ,
GSM2878350 ,
GSM2878351 ,
GSM2878352 ,
GSM2878353 ,
GSM2878354 ,
GSM2878355 ,
GSM2878356 ,
GSM2878357 ,
GSM2878358 ,
GSM2878359 ,
GSM2878360 ,
GSM2878361 ,
GSM2878362 ,
GSM2878363 ,
GSM2878364 ,
GSM2878365 ,
GSM2878366 ,
GSM2878367 ,
GSM2977272 ,
GSM3376347 ,
GSM3376348 ,
GSM3376349 ,
GSM3376350 ,
GSM3376351 ,
GSM3376352 ,
GSM3376353 ,
GSM3376354 ,
GSM3376355 ,
GSM3376356 ,
GSM3376357 ,
GSM3376358 ,
GSM3376359 ,
GSM3376360 ,
GSM3376361 ,
GSM3376362 ,
GSM3376363 ,
GSM3376364 ,
GSM3376365 ,
GSM3376366 ,
GSM3376367 ,
GSM3376368 ,
GSM3376369 ,
GSM3376370 ,
GSM3376371 ,
GSM3376372 ,
GSM3376373 ,
GSM3376374 ,
GSM3376375 ,
GSM3376376 ,
GSM3376377 ,
GSM3376378 ,
GSM3376379 ,
GSM3376380 ,
GSM3376381 ,
GSM3376382 ,
GSM3376383 ,
GSM3376384 ,
GSM3376385 ,
GSM3504413 ,
GSM3504414 ,
GSM3504415 ,
GSM3504416 ,
GSM3504417 ,
GSM3504418 ,
GSM3504419 ,
GSM3504420 ,
GSM3504421 ,
GSM3504422 ,
GSM3504423 ,
GSM4255611 ,
GSM4255612 ,
GSM4255613 ,
GSM4255614 ,
GSM4255615 ,
GSM4255616 ,
GSM4255617 ,
GSM4255618 ,
GSM4255619 ,
GSM4255620 ,
GSM4255621 ,
GSM4255622 ,
GSM4255623 ,
GSM4255624 ,
GSM4255625 ,
GSM4255626 ,
GSM4255627 ,
GSM4255628 ,
GSM4255629 ,
GSM4403944 ,
GSM4403945 ,
GSM4403946 ,
GSM4403947 ,
GSM4403948 ,
GSM4589774 ,
GSM4589775 ,
GSM4589776 ,
GSM4589777 ,
GSM4589778 ,
GSM4589779 ,
GSM4589780 ,
GSM4589781 ,
GSM4589782 ,
GSM4589783 ,
GSM5251056 ,
GSM5251057 ,
GSM5251058 ,
GSM5251059 ,
GSM5251060 ,
GSM5251061 ,
GSM5251062 ,
GSM5251063 ,
GSM5251064 ,
GSM5251065 ,
GSM5251066 ,
GSM5251067 ,
GSM5251068 ,
GSM5251069 ,
GSM5251070 ,
GSM5251071 ,
GSM5251072 ,
GSM5251073 ,
GSM5251074 ,
GSM5251075 ,
GSM5251076 ,
GSM5251077 ,
GSM5251078 ,
GSM5251079 ,
GSM5251080 ,
GSM5251081 ,
GSM5251082 ,
GSM5251083 ,
GSM5251084 ,
GSM5251085 ,
GSM5251086 ,
GSM5251087 ,
GSM5251088 ,
GSM5251089 ,
GSM5251090 ,
GSM5251091 ,
GSM5251092 ,
GSM5251093 ,
GSM5251094 ,
GSM5251095 ,
GSM5517774 ,
GSM5517775 ,
GSM5517776 ,
GSM5517777 ,
GSM5517778 ,
GSM5517779 ,
GSM5517780 ,
GSM5517781 ,
GSM5517782 ,
GSM5517783 ,
GSM5517784 ,
GSM5517785 ,
GSM5517786 ,
GSM5517787 ,
GSM5517788 ,
GSM5517789 ,
GSM5517790 ,
GSM5517791 ,
GSM5517792 ,
GSM5517793 ,
GSM5517794 ,
GSM5517795 ,
GSM5517796 ,
GSM5517797 ,
GSM5517798 ,
GSM5517799 ,
GSM5517800 ,
GSM5517801 ,
GSM5517802 ,
GSM5517803 ,
GSM5517804 ,
GSM5517805 ,
GSM5517806 ,
GSM5517807 ,
GSM5517808 ,
GSM5517809 ,
GSM5517810 ,
GSM5517811 ,
GSM5517812 ,
GSM5517813 ,
GSM5517814 ,
GSM5517815 ,
GSM5517816 ,
GSM5517817 ,
GSM5517818 ,
GSM5517819 ,
GSM5517820 ,
GSM5517821 ,
GSM5517822 ,
GSM5517823 ,
GSM5517824 ,
GSM5517825 ,
GSM7221651 ,
GSM7221652 ,
GSM7221653 ,
GSM7433927 ,
GSM7433928 ,
GSM7696470 ,
GSM7696471 ,
GSM7696472 ,
GSM7696473 ,
GSM7696474 ,
GSM7696475 ,
GSM7696476 Series (24)
GSE19000 Comparative genomic hybridization of 20 patients with Sézary syndrome
GSE21731 Genomic loss of the putative tumor suppressor gene E2A promotes cutaneous T-cell lymphoma in human
GSE63013 The long isoform of RUNX3 acts as a tumor supressor in human T-cell lymphoma
GSE69494 5-FU resistant ESCC
GSE70003 Disseminated medulloblastoma in a child with germline BRCA2 6174delT mutation and without Fanconi anemia
GSE72027 Array CGH analysis for intravascular large B-cell lymphoma (IVLBCL)
GSE72028 Gene expression profiling and array CGH analysis for intravascular large B-cell lymphoma (IVLBCL)
GSE77414 Investigation of MET copy number in various cancer cell lines
GSE107764 The Association of Genomic Lesions and PD-1/PD-L1 Expression in Resected Triple Negative Breast Cancers
GSE110069 Identified amplification regions by high-density array CGH in a human colorectal adenocarcinoma cell line NCI-H716 [400K]
GSE110071 Identified amplification regions by high-density array CGH in a human colorectal adenocarcinoma cell line NCI-H716
GSE119536 Enhanced DNA repair and genomic stability identify a novel HIV related Diffuse Large B-cell Lymphoma subtype [aCGH]
GSE119537 Enhanced DNA repair and genomic stability identify a novel HIV related Diffuse Large B-cell Lymphoma subtype
GSE123464 Clonal Analyses of Refractory Testicular Germ Cell Tumors
GSE143256 Genomic Landscape and Therapeutic Targets of Adenosquamous Carcinoma of the Pancreas [CGH Microarray]
GSE143565 Genomic Landscape and Therapeutic Targets of Adenosquamous Carcinoma of the Pancreas
GSE146670 Unique genomic and neoepitope landscapes across tumors: a study across time, tissues, and space within a single Lynch Syndrome patient
GSE151751 A Patient-Derived Xenograft Preclinical Model for Triple Negative Breast Cancer to Evaluate PDJ Amplicon Heterogeneity and Chemotherapeutic Induction
GSE172262 Unique evolutionary trajectories of breast cancers with distinct genomic and spatial heterogeneity
GSE182081 Application of Array CGH technique for the clinical diagnosis of developmental delay and congenital malformations in Saudi Arabia [400k]
GSE182101 Application of Array CGH technique for the clinical diagnosis of developmental delay and congenital malformations in Saudi Arabia
GSE230411 Patient-derived tumor xenograft study with CDK4/6 inhibitor plus AKT inhibitor for management of metastatic castrate resistant prostate cancer
GSE233746 Phase II Clinical Trial of Nab-Paclitaxel (NAB)Plus Cisplatin (PLA) Plus Gemcitabine (GEM) (NABPLAGEM) in Patients with Untreated Advanced Pancreatic Cancer.
GSE240339 Genomic Landscape of Diploid and Aneuploid Microsatellite Stable Early Onset Colorectal Cancer
Relations Alternative to
GPL9777
Data table header descriptions ID Agilent feature number
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
SPOT_ID Spot identifier
Data table ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION SPOT_ID HsCGHBrightCorner
pos
HsCGHBrightCorner
DarkCorner
pos
DarkCorner
A_16_P17991140
FALSE
NM_012301 MAGI2
membrane associated guanylate kinase, WW and PDZ domain containing 2
ref|NM_012301
chr7:77827408-77827467
hs|q21.11
Homo sapiens membrane associated guanylate kinase, WW and PDZ domain containing 2 (MAGI2), mRNA.
A_16_P17991140
A_16_P33811607
FALSE
NM_207112 HAGHL
hydroxyacylglutathione hydrolase-like
ref|NM_207112|ref|NM_032304
chr16:718810-718854
hs|p13.3
Homo sapiens hydroxyacylglutathione hydrolase-like (HAGHL), transcript variant 1, mRNA.
A_16_P33811607
A_16_P21504511
FALSE
chrX:80682974-80683033
hs|q21.1
A_16_P21504511
A_16_P35765557
FALSE
chr2:88227682-88227738
hs|p11.2
A_16_P35765557
A_18_P22657524
FALSE
NM_001135774 SYN3
synapsin III
ref|NM_001135774
chr22:31775488-31775547
hs|q12.3
Homo sapiens synapsin III (SYN3), transcript variant IIIg, mRNA.
A_18_P22657524
A_16_P16173769
FALSE
NM_014483 RBMS3
RNA binding motif, single stranded interacting protein
ref|NM_014483|ref|NM_001003792|ref|NM_001003793
chr3:29899030-29899089
hs|p24.1
Homo sapiens RNA binding motif, single stranded interacting protein (RBMS3), transcript variant 2, mRNA.
A_16_P16173769
A_16_P20508688
FALSE
chr16:68351412-68351471
hs|q22.1
A_16_P20508688
A_16_P17090144
FALSE
NM_015384 NIPBL
Nipped-B homolog (Drosophila)
ref|NM_015384|ref|NM_133433
chr5:36969564-36969623
hs|p13.2
Homo sapiens Nipped-B homolog (Drosophila) (NIPBL), transcript variant B, mRNA.
A_16_P17090144
A_16_P20531565
FALSE
NM_016373 WWOX
WW domain containing oxidoreductase
ref|NM_016373
chr16:77655632-77655691
hs|q23.1
Homo sapiens WW domain containing oxidoreductase (WWOX), transcript variant 1, mRNA.
A_16_P20531565
A_16_P38660011
FALSE
NM_173550 C9orf93
chromosome 9 open reading frame 93
ref|NM_173550
chr9:15605655-15605714
hs|p22.3
Homo sapiens chromosome 9 open reading frame 93 (C9orf93), mRNA.
A_16_P38660011
A_18_P13399885
FALSE
chr2:132055046-132055105
hs|q21.1
A_18_P13399885
A_18_P10796304
FALSE
NR_026592 BMS1P4
BMS1 pseudogene 4
ref|NR_026592
chr10:75153837-75153889
hs|q22.2
Homo sapiens BMS1 pseudogene 4 (BMS1P4), non-coding RNA.
A_18_P10796304
A_16_P03203060
FALSE
chr17:2617550-2617609
hs|p13.3
A_16_P03203060
A_16_P03779402
FALSE
chrX:137510102-137510161
hs|q26.3
A_16_P03779402
A_14_P137194
FALSE
NR_026935 LOC158696
hypothetical LOC158696
ref|NR_026935
chrX:137525298-137525357
hs|q26.3
Homo sapiens hypothetical LOC158696 (LOC158696), non-coding RNA.
A_14_P137194
A_18_P14055431
FALSE
NM_000844 GRM7
glutamate receptor, metabotropic 7
ref|NM_000844|ref|NM_181874
chr3:7130923-7130982
hs|p26.1
Homo sapiens glutamate receptor, metabotropic 7 (GRM7), transcript variant 1, mRNA.
A_18_P14055431
A_16_P15776094
FALSE
AK056906 gb|AK056906
chr2:108317426-108317485
hs|q12.3
Homo sapiens cDNA FLJ32344 fis, clone PROST2006450, moderately similar to N-HYDROXYARYLAMINE SULFOTRANSFERASE (EC 2.8.2.-).
A_16_P15776094
A_16_P20147195
FALSE
chr14:94287480-94287534
hs|q32.13
A_16_P20147195
413786 65856 Kbytes .Supplementary data files not provided
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