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Platform GPL19480 Query DataSets for GPL19480
Status Public on Dec 02, 2014
Title [OviGene-1_1-st] Ovine Gene 1.1 ST Array [transcript (gene) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Ovis aries
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

#%create_date=Wed Apr 2 21:43:34 2014 PDT
#%chip_type=OviGene-1_1-st-v1
#%lib_set_name=OviGene-1_1-st
#%lib_set_version=v1
#%genome-version=oar2
#%genome-version-ucsc=oar2
#%genome-lifted-method=NONE
#%genome-lifted_from-version-ucsc=oar2.0
#%netaffx-annotation-date=2013-08-30
#%netaffx-annotation-netaffx-build=34

Dec 02, 2014: annotation table based on netaffx build 34
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=modelorg_1_1_array
http://www.affymetrix.com/support/technical/libraryfilesmain.affx
Submission date Dec 02, 2014
Last update date Dec 02, 2014
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (74) GSM1556940, GSM1556941, GSM1556942, GSM1556943, GSM1556944, GSM1556945 
Series (4)
GSE63774 Longissimus Thoracis and subcutaneous fat transcriptome study in lambs
GSE83792 Effect of post-ruminal butyrate infusion on gene expression in the duodenum of growing sheep
GSE84417 Expression data from uterus tissue of sheep

Data table header descriptions
ID transcript_cluster_id
probeset_id Unique identifier for the probe set.
SPOT_ID
seqname
strand (+|-)
start (integer). Coordinates are standard 1-based (length=stop-start+1).
stop (integer). Coordinates are standard 1-based (length=stop-start+1).
total_probes
gene_assignment
mrna_assignment
swissprot
unigene
GO_biological_process
GO_cellular_component
GO_molecular_function
pathway
protein_domains
crosshyb_type
category Array design category of the transcript cluster

Data table
ID probeset_id SPOT_ID seqname strand start stop total_probes gene_assignment mrna_assignment swissprot unigene GO_biological_process GO_cellular_component GO_molecular_function pathway protein_domains crosshyb_type category
14708772 14708772 scaffold_10(+):479223-584851 scaffold_10 + 479223 584851 23 ENST00000409609 // GULP1 // GULP, engulfment adaptor PTB domain containing 1 // 2q32.3-q33 // 51454 /// XM_004004515 // GULP1 // GULP, engulfment adaptor PTB domain containing 1 // --- // 101115004 /// XM_004004516 // GULP1 // GULP, engulfment adaptor PTB domain containing 1 // --- // 101115004 ENST00000409609 // CSIRO // [mRNA] locus=scaffold10:479223:584851:+ gene:ENSG00000144366 // scaffold_10 // 100 // 100 // 23 // 23 // 0 /// XM_004004515 // RefSeq // PREDICTED: Ovis aries GULP, engulfment adaptor PTB domain containing 1 (GULP1), mRNA. // scaffold_10 // 100 // 87 // 20 // 20 // 0 /// XM_004004516 // RefSeq // PREDICTED: Ovis aries GULP, engulfment adaptor PTB domain containing 1 (GULP1), mRNA. // scaffold_10 // 100 // 65 // 15 // 15 // 0 ENST00000409609 // Q9UBP9 /// ENST00000409609 // B8ZZL1 /// ENST00000409609 // B3KN52 /// ENST00000409609 // Q59EC1 ENST00000409609 // Hs.470887 // adrenal gland| ascites| bone| bone marrow| brain| connective tissue| embryonic tissue| eye| heart| intestine| kidney| liver| lung| mammary gland| mouth| muscle| pancreas| parathyroid| placenta| prostate| salivary gland| skin| stomach| testis| thymus| trachea| uterus| vascular|adrenal tumor| breast (mammary gland) tumor| colorectal tumor| gastrointestinal tumor| germ cell tumor| glioma| kidney tumor| leukemia| liver tumor| lung tumor| normal| pancreatic tumor| primitive neuroectodermal tumor of the CNS| prostate cancer| skin tumor| soft tissue/muscle tissue tumor| uterine tumor|embryoid body| blastocyst| fetus| neonate| infant| juvenile| adult /// ENST00000409609 // Hs.595546 // placenta| stomach| testis| gastrointestinal tumor| normal| primitive neuroectodermal tumor of the CNS| adult /// ENST00000409609 // Hs.712910 // uterus| germ cell tumor| uterine tumor ENST00000409609 // GO:0006869 // lipid transport // inferred from electronic annotation /// ENST00000409609 // GO:0006911 // phagocytosis, engulfment // inferred from direct assay /// ENST00000409609 // GO:0006915 // apoptotic process // inferred from electronic annotation /// ENST00000409609 // GO:0007165 // signal transduction // traceable author statement /// ENST00000409609 // GO:0006810 // transport // inferred from electronic annotation /// ENST00000409609 // GO:0006909 // phagocytosis // inferred from electronic annotation /// ENST00000409609 // GO:0006911 // phagocytosis, engulfment // traceable author statement /// ENST00000409609 // GO:0006915 // apoptotic process // traceable author statement ENST00000409609 // GO:0005737 // cytoplasm // inferred from direct assay /// ENST00000409609 // GO:0005737 // cytoplasm // inferred from electronic annotation ENST00000409609 // GO:0004871 // signal transducer activity // traceable author statement /// ENST00000409609 // GO:0005515 // protein binding // inferred from electronic annotation --- ENST00000409609 // Pfam // IPR006020 // Phosphotyrosine interaction domain /// ENST00000409609 // Pfam // IPR013625 // Tensin phosphotyrosine-binding domain 1 main
14708782 14708782 scaffold_10(+):1021730-1050583 scaffold_10 + 1021730 1050583 30 ENST00000304636 // COL3A1 // collagen, type III, alpha 1 // 2q31 // 1281 /// DQ239680 // LOC100101231 // collagen type III alpha 1 // --- // 100101231 ENST00000304636 // CSIRO // [mRNA] locus=scaffold10:1021730:1050583:+ gene:ENSG00000168542 // scaffold_10 // 100 // 100 // 30 // 30 // 0 /// DQ239680 // GenBank // Ovis aries clone clone TO-UP-G3-6 collagen type III alpha 1 mRNA, partial cds. // scaffold_10 // 100 // 10 // 3 // 3 // 0 ENST00000304636 // P02461 /// ENST00000304636 // Q6LBY7 /// ENST00000304636 // D2JYH5 /// DQ239680 // Q307E6 ENST00000304636 // Hs.443625 // adipose tissue| adrenal gland| ascites| bladder| blood| bone| bone marrow| brain| cervix| connective tissue| ear| embryonic tissue| esophagus| eye| heart| intestine| kidney| larynx| liver| lung| lymph| lymph node| mammary gland| mouth| muscle| nerve| ovary| pancreas| pharynx| placenta| prostate| skin| spleen| stomach| testis| thymus| thyroid| trachea| umbilical cord| uterus| vascular|adrenal tumor| bladder carcinoma| breast (mammary gland) tumor| cervical tumor| chondrosarcoma| colorectal tumor| esophageal tumor| gastrointestinal tumor| germ cell tumor| glioma| head and neck tumor| kidney tumor| leukemia| liver tumor| lung tumor| lymphoma| non-neoplasia| normal| ovarian tumor| pancreatic tumor| primitive neuroectodermal tumor of the CNS| prostate cancer| skin tumor| soft tissue/muscle tissue tumor| uterine tumor|embryoid body| blastocyst| fetus| neonate| infant| juvenile| adult /// ENST00000304636 // Hs.708235 // brain| ear| heart| intestine| lung| ovary| pancreas| testis| uterus| germ cell tumor| normal| pancreatic tumor| uterine tumor| fetus| adult /// DQ239680 // Oar.14381 // bone ENST00000304636 // GO:0001501 // skeletal system development // inferred from electronic annotation /// ENST00000304636 // GO:0001568 // blood vessel development // inferred from electronic annotation /// ENST00000304636 // GO:0007160 // cell-matrix adhesion // inferred from direct assay /// ENST00000304636 // GO:0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// ENST00000304636 // GO:0007229 // integrin-mediated signaling pathway // inferred from mutant phenotype /// ENST00000304636 // GO:0007411 // axon guidance // traceable author statement /// ENST00000304636 // GO:0007507 // heart development // inferred from mutant phenotype /// ENST00000304636 // GO:0009314 // response to radiation // inferred from direct assay /// ENST00000304636 // GO:0018149 // peptide cross-linking // inferred from direct assay /// ENST00000304636 // GO:0022617 // extracellular matrix disassembly // traceable author statement /// ENST00000304636 // GO:0030168 // platelet activation // non-traceable author statement /// ENST00000304636 // GO:0030198 // extracellular matrix organization // traceable author statement /// ENST00000304636 // GO:0030199 // collagen fibril organization // inferred from mutant phenotype /// ENST00000304636 // GO:0030199 // collagen fibril organization // non-traceable author statement /// ENST00000304636 // GO:0030574 // collagen catabolic process // traceable author statement /// ENST00000304636 // GO:0032964 // collagen biosynthetic process // inferred from mutant phenotype /// ENST00000304636 // GO:0032964 // collagen biosynthetic process // traceable author statement /// ENST00000304636 // GO:0034097 // response to cytokine stimulus // inferred from direct assay /// ENST00000304636 // GO:0042060 // wound healing // inferred from direct assay /// ENST00000304636 // GO:0042060 // wound healing // non-traceable author statement /// ENST00000304636 // GO:0043206 // extracellular fibril organization // inferred from mutant phenotype /// ENST00000304636 // GO:0043588 // skin development // inferred from mutant phenotype /// ENST00000304636 // GO:0048565 // digestive tract development // inferred from electronic annotation /// ENST00000304636 // GO:0050777 // negative regulation of immune response // inferred from mutant phenotype /// ENST00000304636 // GO:0071230 // cellular response to amino acid stimulus // inferred from electronic annotation /// ENST00000304636 // GO:0030199 // collagen fibril organization // inferred from electronic annotation /// ENST00000304636 // GO:0021987 // cerebral cortex development // inferred from sequence or structural similarity /// ENST00000304636 // GO:0035025 // positive regulation of Rho protein signal transduction // inferred from sequence or structural similarity /// ENST00000304636 // GO:2001223 // negative regulation of neuron migration // inferred from sequence or structural similarity ENST00000304636 // GO:0005576 // extracellular region // traceable author statement /// ENST00000304636 // GO:0005586 // collagen type III // inferred from mutant phenotype /// ENST00000304636 // GO:0005586 // collagen type III // non-traceable author statement /// ENST00000304636 // GO:0005615 // extracellular space // inferred from direct assay /// ENST00000304636 // GO:0005615 // extracellular space // non-traceable author statement /// ENST00000304636 // GO:0005788 // endoplasmic reticulum lumen // traceable author statement /// ENST00000304636 // GO:0031012 // extracellular matrix // inferred from mutant phenotype /// ENST00000304636 // GO:0031012 // extracellular matrix // traceable author statement /// ENST00000304636 // GO:0005581 // collagen // inferred from electronic annotation /// ENST00000304636 // GO:0005586 // collagen type III // inferred from electronic annotation /// ENST00000304636 // GO:0031012 // extracellular matrix // inferred from electronic annotation /// ENST00000304636 // GO:0005576 // extracellular region // inferred from electronic annotation /// ENST00000304636 // GO:0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// DQ239680 // GO:0005581 // collagen // inferred from electronic annotation ENST00000304636 // GO:0005178 // integrin binding // inferred from mutant phenotype /// ENST00000304636 // GO:0005178 // integrin binding // non-traceable author statement /// ENST00000304636 // GO:0005201 // extracellular matrix structural constituent // inferred from mutant phenotype /// ENST00000304636 // GO:0005515 // protein binding // inferred from physical interaction /// ENST00000304636 // GO:0046332 // SMAD binding // inferred from electronic annotation /// ENST00000304636 // GO:0046872 // metal ion binding // inferred from electronic annotation /// ENST00000304636 // GO:0048407 // platelet-derived growth factor binding // inferred from direct assay /// ENST00000304636 // GO:0005201 // extracellular matrix structural constituent // inferred from electronic annotation ENST00000304636 // GenMAPP // Inflammatory_Response_Pathway ENST00000304636 // Pfam // IPR000885 // Fibrillar collagen, C-terminal /// ENST00000304636 // Pfam // IPR001007 // von Willebrand factor, type C /// ENST00000304636 // Pfam // IPR008160 // Collagen triple helix repeat 1 main
14708813 14708813 scaffold_10(+):1446982-1481465 scaffold_10 + 1446982 1481465 37 ENSBTAT00000003908 // WDR75 // WD repeat domain 75 // --- // 521240 ENSBTAT00000003908 // CSIRO // [mRNA] locus=scaffold10:1446982:1481465:+ gene:ENSBTAG00000003002 // scaffold_10 // 100 // 100 // 37 // 37 // 0 ENSBTAT00000003908 // F1MCR2 /// ENSBTAT00000003908 // A6QQR0 ENSBTAT00000003908 // Bt.28680 // abomasum| adipose tissue| extraembryonic tissue| intestine| kidney| lymphoreticular| muscle| pancreas|fetus| calf --- ENSBTAT00000003908 // GO:0005634 // nucleus // inferred from electronic annotation ENSBTAT00000003908 // GO:0005515 // protein binding // inferred from electronic annotation --- ENSBTAT00000003908 // Pfam // IPR001680 // WD40 repeat 1 main
14708835 14708835 scaffold_10(+):1749291-1753997 scaffold_10 + 1749291 1753997 26 XM_004004509 // ASNSD1 // asparagine synthetase domain containing 1 // --- // 101113564 XM_004004509 // RefSeq // PREDICTED: Ovis aries asparagine synthetase domain containing 1 (ASNSD1), mRNA. // scaffold_10 // 100 // 100 // 26 // 26 // 0 /// ENSBTAP00000000622 // CSIRO // [mRNA] locus=scaffold10:1749291:1753997:+ // scaffold_10 // 100 // 100 // 26 // 26 // 0 --- --- --- --- --- --- --- 1 main
14708839 14708839 scaffold_10(+):1761577-1813940 scaffold_10 + 1761577 1813940 39 ENST00000431575 // ANKAR // ankyrin and armadillo repeat containing // 2q32.2 // 150709 /// XM_004004508 // ANKAR // ankyrin and armadillo repeat containing // --- // 101113304 ENST00000431575 // CSIRO // [mRNA] locus=scaffold10:1761577:1813940:+ gene:ENSG00000151687 // scaffold_10 // 100 // 100 // 39 // 39 // 0 /// XM_004004508 // RefSeq // PREDICTED: Ovis aries ankyrin and armadillo repeat containing (ANKAR), mRNA. // scaffold_10 // 100 // 100 // 39 // 39 // 0 ENST00000431575 // J3KQB7 /// ENST00000431575 // Q7Z5J8 /// ENST00000431575 // Q70AK8 /// ENST00000431575 // Q8N7F8 ENST00000431575 // Hs.655700 // bone marrow| brain| embryonic tissue| eye| lung| lymph node| muscle| placenta| prostate| spleen| testis| thymus| uterus| leukemia| normal| blastocyst| fetus| adult --- ENST00000431575 // GO:0016021 // integral to membrane // inferred from electronic annotation /// ENST00000431575 // GO:0016020 // membrane // inferred from electronic annotation ENST00000431575 // GO:0005515 // protein binding // inferred from electronic annotation /// ENST00000431575 // GO:0005488 // binding // inferred from electronic annotation --- ENST00000431575 // Pfam // IPR000225 // Armadillo 1 main
14708862 14708862 scaffold_10(+):1854704-1954608 scaffold_10 + 1854704 1954608 36 ENST00000441310 // PMS1 // PMS1 postmeiotic segregation increased 1 (S. cerevisiae) // 2q31.1 // 5378 ENST00000441310 // CSIRO // [mRNA] locus=scaffold10:1854704:1954608:+ gene:ENSG00000064933 // scaffold_10 // 100 // 100 // 36 // 36 // 0 ENST00000441310 // P54277 /// ENST00000441310 // B7ZAA0 /// ENST00000441310 // Q5FBZ2 /// ENST00000441310 // C9J4L1 /// ENST00000441310 // C9JF76 /// ENST00000441310 // C9JKP0 /// ENST00000441310 // B4DIH7 /// ENST00000441310 // B4DMF4 /// ENST00000441310 // B4E3A1 /// ENST00000441310 // Q5FBZ1 /// ENST00000441310 // Q5FBZ4 /// ENST00000441310 // Q5FBZ5 /// ENST00000441310 // Q5FBZ6 /// ENST00000441310 // Q5FBZ7 /// ENST00000441310 // Q5FBZ9 /// ENST00000441310 // Q5XG96 /// ENST00000441310 // Q7KZT4 ENST00000441310 // Hs.111749 // adipose tissue| ascites| bladder| blood| bone| bone marrow| brain| connective tissue| embryonic tissue| eye| heart| intestine| kidney| liver| lung| lymph node| mammary gland| mouth| muscle| ovary| pancreas| parathyroid| pituitary gland| placenta| prostate| salivary gland| skin| stomach| testis| thymus| trachea| uterus| chondrosarcoma| colorectal tumor| gastrointestinal tumor| germ cell tumor| glioma| head and neck tumor| kidney tumor| leukemia| liver tumor| lung tumor| lymphoma| non-neoplasia| normal| ovarian tumor| primitive neuroectodermal tumor of the CNS| prostate cancer| retinoblastoma| skin tumor| soft tissue/muscle tissue tumor| uterine tumor|embryoid body| blastocyst| fetus| infant| juvenile| adult ENST00000441310 // GO:0006200 // ATP catabolic process // not recorded /// ENST00000441310 // GO:0006298 // mismatch repair // not recorded /// ENST00000441310 // GO:0007131 // reciprocal meiotic recombination // not recorded /// ENST00000441310 // GO:0006200 // ATP catabolic process // --- /// ENST00000441310 // GO:0006298 // mismatch repair // inferred from electronic annotation /// ENST00000441310 // GO:0007131 // reciprocal meiotic recombination // --- /// ENST00000441310 // GO:0006281 // DNA repair // inferred from electronic annotation /// ENST00000441310 // GO:0006298 // mismatch repair // --- /// ENST00000441310 // GO:0006298 // mismatch repair // traceable author statement /// ENST00000441310 // GO:0006974 // response to DNA damage stimulus // inferred from electronic annotation ENST00000441310 // GO:0005634 // nucleus // traceable author statement /// ENST00000441310 // GO:0032300 // mismatch repair complex // not recorded /// ENST00000441310 // GO:0032389 // MutLalpha complex // not recorded /// ENST00000441310 // GO:0032300 // mismatch repair complex // --- /// ENST00000441310 // GO:0032389 // MutLalpha complex // --- /// ENST00000441310 // GO:0005634 // nucleus // inferred from electronic annotation ENST00000441310 // GO:0003677 // DNA binding // traceable author statement /// ENST00000441310 // GO:0003697 // single-stranded DNA binding // not recorded /// ENST00000441310 // GO:0005524 // ATP binding // inferred from electronic annotation /// ENST00000441310 // GO:0016887 // ATPase activity // not recorded /// ENST00000441310 // GO:0030983 // mismatched DNA binding // inferred from electronic annotation /// ENST00000441310 // GO:0032407 // MutSalpha complex binding // not recorded /// ENST00000441310 // GO:0003697 // single-stranded DNA binding // --- /// ENST00000441310 // GO:0016887 // ATPase activity // --- /// ENST00000441310 // GO:0032407 // MutSalpha complex binding // --- /// ENST00000441310 // GO:0003677 // DNA binding // inferred from electronic annotation --- ENST00000441310 // Pfam // IPR003594 // Histidine kinase-like ATPase, ATP-binding domain /// ENST00000441310 // Pfam // IPR009071 // High mobility group (HMG) box domain /// ENST00000441310 // Pfam // IPR013507 // DNA mismatch repair protein, C-terminal 1 main
14708875 14708875 scaffold_10(+):2323492-2323779 scaffold_10 + 2323492 2323779 23 ENST00000409870 // C2orf88 // chromosome 2 open reading frame 88 // 2q32.2 // 84281 /// XM_004004499 // C2H2orf88 // chromosome 2 open reading frame, human C2orf88 // --- // 101111429 ENST00000409870 // CSIRO // [mRNA] locus=scaffold10:2323492:2323779:+ gene:ENSG00000187699 // scaffold_10 // 100 // 100 // 23 // 23 // 0 /// XM_004004499 // RefSeq // PREDICTED: Ovis aries chromosome 2 open reading frame, human C2orf88 (C2H2orf88), mRNA. // scaffold_10 // 100 // 100 // 23 // 23 // 0 ENST00000409870 // Q9BSF0 /// ENST00000409870 // C9JS57 /// ENST00000409870 // H7BZ15 /// ENST00000409870 // P0C876 ENST00000409870 // Hs.389311 // bladder| bone marrow| brain| connective tissue| intestine| kidney| liver| lymph node| mouth| muscle| nerve| ovary| placenta| prostate| skin| testis| thymus| trachea| uterus| chondrosarcoma| germ cell tumor| leukemia| liver tumor| non-neoplasia| normal| ovarian tumor| prostate cancer| skin tumor| soft tissue/muscle tissue tumor| uterine tumor| fetus| juvenile| adult --- ENST00000409870 // GO:0005576 // extracellular region // inferred from electronic annotation /// ENST00000409870 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENST00000409870 // GO:0016020 // membrane // inferred from electronic annotation ENST00000409870 // GO:0034237 // protein kinase A regulatory subunit binding // inferred from electronic annotation --- --- 1 main
14708877 14708877 scaffold_10(+):2482642-2493375 scaffold_10 + 2482642 2493375 22 ENSBTAT00000009977 // INPP1 // inositol polyphosphate-1-phosphatase // --- // 281869 ENSBTAT00000009977 // CSIRO // [mRNA] locus=scaffold10:2482642:2493375:+ gene:ENSBTAG00000007584 // scaffold_10 // 100 // 100 // 22 // 22 // 0 ENSBTAT00000009977 // P21327 ENSBTAT00000009977 // Bt.5174 // abomasum| brain| kidney| mammary gland| pineal gland| reticulum| uterus|fetus| calf| adult ENSBTAT00000009977 // GO:0046854 // phosphatidylinositol phosphorylation // inferred from electronic annotation --- ENSBTAT00000009977 // GO:0004441 // inositol-1,4-bisphosphate 1-phosphatase activity // inferred from electronic annotation /// ENSBTAT00000009977 // GO:0046872 // metal ion binding // inferred from electronic annotation /// ENSBTAT00000009977 // GO:0016787 // hydrolase activity // inferred from electronic annotation --- ENSBTAT00000009977 // Pfam // IPR000760 // Inositol monophosphatase 1 main
14708883 14708883 scaffold_10(+):2554497-2613754 scaffold_10 + 2554497 2613754 27 ENSBTAT00000010151 // MFSD6 // major facilitator superfamily domain containing 6 // --- // 534463 /// XM_004004496 // MFSD6 // major facilitator superfamily domain containing 6 // --- // 101110650 ENSBTAT00000010151 // CSIRO // [mRNA] locus=scaffold10:2554497:2613754:+ gene:ENSBTAG00000007719 // scaffold_10 // 100 // 100 // 27 // 27 // 0 /// XM_004004496 // RefSeq // PREDICTED: Ovis aries major facilitator superfamily domain containing 6 (MFSD6), mRNA. // scaffold_10 // 100 // 100 // 27 // 27 // 0 ENSBTAT00000010151 // E1BM81 /// ENSBTAT00000010151 // A7YVI1 ENSBTAT00000010151 // Bt.2425 // brain| embryonic tissue| intestine| mammary gland| uterus|fetus| calf| adult ENSBTAT00000010151 // GO:0055085 // transmembrane transport // inferred from electronic annotation ENSBTAT00000010151 // GO:0016021 // integral to membrane // inferred from electronic annotation --- --- ENSBTAT00000010151 // Pfam // IPR011701 // Major facilitator superfamily 1 main
14708890 14708890 scaffold_10(+):2779552-2813914 scaffold_10 + 2779552 2813914 22 ENSBTAT00000000331 // NAB1 // NGFI-A binding protein 1 (EGR1 binding protein 1) // 2q15-q21 // 516781 ENSBTAT00000000331 // CSIRO // [mRNA] locus=scaffold10:2779552:2813914:+ gene:ENSBTAG00000000266 // scaffold_10 // 100 // 82 // 18 // 18 // 0 ENSBTAT00000000331 // A7MB61 ENSBTAT00000000331 // Bt.17492 // abomasum| adrenal gland| brain| extraembryonic tissue| intestine| lymphoreticular| mammary gland| muscle| skin|fetus| calf| adult ENSBTAT00000000331 // GO:0001958 // endochondral ossification // inferred from electronic annotation /// ENSBTAT00000000331 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// ENSBTAT00000000331 // GO:0014037 // Schwann cell differentiation // inferred from electronic annotation /// ENSBTAT00000000331 // GO:0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// ENSBTAT00000000331 // GO:0042552 // myelination // inferred from electronic annotation /// ENSBTAT00000000331 // GO:0045682 // regulation of epidermis development // inferred from electronic annotation ENSBTAT00000000331 // GO:0005634 // nucleus // inferred from electronic annotation ENSBTAT00000000331 // GO:0008134 // transcription factor binding // inferred from electronic annotation --- ENSBTAT00000000331 // Pfam // IPR006986 // Nab1, C-terminal /// ENSBTAT00000000331 // Pfam // IPR006988 // Nab, N-terminal /// ENSBTAT00000000331 // Pfam // IPR006989 // NAB co-repressor, domain 1 main
14708897 14708897 scaffold_10(-):339160-339477 scaffold_10 - 339160 339477 12 ENSBTAT00000000331 // NAB1 // NGFI-A binding protein 1 (EGR1 binding protein 1) // 2q15-q21 // 516781 GLEAN_10019982 // CSIRO // [mRNA] locus=scaffold10:339160:339477:- // scaffold_10 // 100 // 100 // 12 // 12 // 0 /// ENSBTAT00000006026 // CSIRO // [mRNA] locus=scaffold1367:388955:398210:- gene:ENSBTAG00000004590 // scaffold_10 // 25 // 100 // 3 // 12 // 1 ENSBTAT00000000331 // A7MB61 ENSBTAT00000000331 // Bt.17492 // abomasum| adrenal gland| brain| extraembryonic tissue| intestine| lymphoreticular| mammary gland| muscle| skin|fetus| calf| adult ENSBTAT00000000331 // GO:0001958 // endochondral ossification // inferred from electronic annotation /// ENSBTAT00000000331 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// ENSBTAT00000000331 // GO:0014037 // Schwann cell differentiation // inferred from electronic annotation /// ENSBTAT00000000331 // GO:0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// ENSBTAT00000000331 // GO:0042552 // myelination // inferred from electronic annotation /// ENSBTAT00000000331 // GO:0045682 // regulation of epidermis development // inferred from electronic annotation ENSBTAT00000000331 // GO:0005634 // nucleus // inferred from electronic annotation ENSBTAT00000000331 // GO:0008134 // transcription factor binding // inferred from electronic annotation --- ENSBTAT00000000331 // Pfam // IPR006986 // Nab1, C-terminal /// ENSBTAT00000000331 // Pfam // IPR006988 // Nab, N-terminal /// ENSBTAT00000000331 // Pfam // IPR006989 // NAB co-repressor, domain 3 main
14708899 14708899 scaffold_10(-):1069817-1143489 scaffold_10 - 1069817 1143489 36 ENSBTAT00000038684 // COL5A2 // collagen, type V, alpha 2 // 2q14-q15 // 538590 /// XM_004004513 // COL5A2 // collagen, type V, alpha 2 // --- // 101114493 ENSBTAT00000038684 // CSIRO // [mRNA] locus=scaffold10:1069817:1143489:- gene:ENSBTAG00000027020 // scaffold_10 // 100 // 100 // 36 // 36 // 0 /// XM_004004513 // RefSeq // PREDICTED: Ovis aries collagen, type V, alpha 2 (COL5A2), mRNA. // scaffold_10 // 100 // 100 // 36 // 36 // 0 ENSBTAT00000038684 // F1N2Y2 ENSBTAT00000038684 // Bt.55266 // abomasum| adipose tissue| brain| cartilage| embryonic tissue| extraembryonic tissue| intestine| kidney| liver| lung| lymphoreticular| mammary gland| muscle| ovary| pancreas| reticulum| skin| uterus|fetus| calf| adult ENSBTAT00000038684 // GO:0001501 // skeletal system development // inferred from electronic annotation /// ENSBTAT00000038684 // GO:0007165 // signal transduction // inferred from electronic annotation /// ENSBTAT00000038684 // GO:0071230 // cellular response to amino acid stimulus // inferred from electronic annotation /// ENSBTAT00000038684 // GO:0030199 // collagen fibril organization // inferred from electronic annotation /// ENSBTAT00000038684 // GO:0043588 // skin development // inferred from electronic annotation /// ENSBTAT00000038684 // GO:0048592 // eye morphogenesis // inferred from electronic annotation ENSBTAT00000038684 // GO:0005581 // collagen // inferred from electronic annotation /// ENSBTAT00000038684 // GO:0005588 // collagen type V // inferred from electronic annotation ENSBTAT00000038684 // GO:0005515 // protein binding // inferred from electronic annotation /// ENSBTAT00000038684 // GO:0005102 // receptor binding // inferred from electronic annotation /// ENSBTAT00000038684 // GO:0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// ENSBTAT00000038684 // GO:0046332 // SMAD binding // inferred from electronic annotation --- ENSBTAT00000038684 // Pfam // IPR000885 // Fibrillar collagen, C-terminal /// ENSBTAT00000038684 // Pfam // IPR001007 // von Willebrand factor, type C /// ENSBTAT00000038684 // Pfam // IPR008160 // Collagen triple helix repeat 1 main
14708936 14708936 scaffold_10(-):1621996-1643231 scaffold_10 - 1621996 1643231 31 XM_004004510 // SLC40A1 // solute carrier family 40 (iron-regulated transporter), member 1 // --- // 101113825 /// XM_004004511 // SLC40A1 // solute carrier family 40 (iron-regulated transporter), member 1 // --- // 101113825 XM_004004510 // RefSeq // PREDICTED: Ovis aries solute carrier family 40 (iron-regulated transporter), member 1, transcript variant 1 (SLC40A1), mRNA. // scaffold_10 // 100 // 100 // 31 // 31 // 0 /// XM_004004511 // RefSeq // PREDICTED: Ovis aries solute carrier family 40 (iron-regulated transporter), member 1, transcript variant 2 (SLC40A1), mRNA. // scaffold_10 // 100 // 100 // 31 // 31 // 0 /// ENSBTAP00000013868 // CSIRO // [mRNA] locus=scaffold10:1621996:1643231:- // scaffold_10 // 100 // 100 // 31 // 31 // 0 --- --- --- --- --- --- --- 1 main
14708945 14708945 scaffold_10(-):1700858-1715373 scaffold_10 - 1700858 1715373 25 --- GLEAN_10019988 // CSIRO // [mRNA] locus=scaffold10:1700858:1715373:- // scaffold_10 // 100 // 100 // 25 // 25 // 0 --- --- --- --- --- --- --- 1 main
14708948 14708948 scaffold_10(-):1816754-1825710 scaffold_10 - 1816754 1825710 26 ENSBTAT00000016671 // OSGEPL1 // O-sialoglycoprotein endopeptidase-like 1 // --- // 514738 ENSBTAT00000016671 // CSIRO // [mRNA] locus=scaffold10:1816754:1825710:- gene:ENSBTAG00000012557 // scaffold_10 // 100 // 100 // 26 // 26 // 0 ENSBTAT00000016671 // E1BHC5 ENSBTAT00000016671 // Bt.28821 // abomasum| brain| intestine| kidney| lymphoreticular| mammary gland| muscle| ovary| pineal gland| uterus|fetus| calf| adult ENSBTAT00000016671 // GO:0006508 // proteolysis // inferred from electronic annotation /// ENSBTAT00000016671 // GO:0070526 // threonylcarbamoyladenosine biosynthetic process // inferred from electronic annotation ENSBTAT00000016671 // GO:0005739 // mitochondrion // inferred from electronic annotation ENSBTAT00000016671 // GO:0004222 // metalloendopeptidase activity // inferred from electronic annotation --- ENSBTAT00000016671 // Pfam // IPR000905 // Gcp-like domain 1 main
14708956 14708956 scaffold_10(-):1836841-1845159 scaffold_10 - 1836841 1845159 22 ENST00000392350 // ORMDL1 // ORM1-like 1 (S. cerevisiae) // 2q32 // 94101 ENST00000392350 // CSIRO // [mRNA] locus=scaffold10:1836841:1845159:- gene:ENSG00000128699 // scaffold_10 // 100 // 100 // 22 // 22 // 0 ENST00000392350 // Q9P0S3 /// ENST00000392350 // B9A069 ENST00000392350 // Hs.700632 // adipose tissue| adrenal gland| ascites| bladder| blood| bone| bone marrow| brain| connective tissue| ear| embryonic tissue| eye| heart| intestine| kidney| liver| lung| lymph node| mammary gland| mouth| muscle| ovary| pancreas| pharynx| pituitary gland| placenta| prostate| skin| spleen| stomach| testis| thymus| thyroid| trachea| uterus| vascular|adrenal tumor| bladder carcinoma| breast (mammary gland) tumor| chondrosarcoma| colorectal tumor| gastrointestinal tumor| germ cell tumor| glioma| head and neck tumor| kidney tumor| leukemia| liver tumor| lung tumor| lymphoma| non-neoplasia| normal| ovarian tumor| pancreatic tumor| primitive neuroectodermal tumor of the CNS| prostate cancer| retinoblastoma| skin tumor| uterine tumor|embryoid body| blastocyst| fetus| infant| juvenile| adult ENST00000392350 // GO:0006672 // ceramide metabolic process // inferred from mutant phenotype ENST00000392350 // GO:0005789 // endoplasmic reticulum membrane // inferred from direct assay /// ENST00000392350 // GO:0016021 // integral to membrane // inferred from electronic annotation /// ENST00000392350 // GO:0005783 // endoplasmic reticulum // inferred from electronic annotation /// ENST00000392350 // GO:0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// ENST00000392350 // GO:0016020 // membrane // inferred from electronic annotation --- --- ENST00000392350 // Pfam // IPR007203 // ORMDL 1 main
14708962 14708962 scaffold_10(-):2134831-2139821 scaffold_10 - 2134831 2139821 25 ENSBTAT00000015674 // MSTN // myostatin // 2q14-q15 // 281187 /// NM_001009428 // MSTN // myostatin // --- // 443449 /// AM992883 // MSTN // myostatin // --- // 443449 ENSBTAT00000015674 // CSIRO // [mRNA] locus=scaffold10:2134831:2139821:- gene:ENSBTAG00000011808 // scaffold_10 // 100 // 100 // 25 // 25 // 0 /// NM_001009428 // RefSeq // Ovis aries myostatin (MSTN), mRNA. // scaffold_10 // 100 // 100 // 25 // 25 // 0 /// AM992883 // GenBank // Ovis aries mRNA for myostatin (mstn gene), wild type allele. // scaffold_10 // 100 // 100 // 25 // 25 // 0 ENSBTAT00000015674 // O18836 /// ENSBTAT00000015674 // Q9BDK1 /// ENSBTAT00000015674 // Q645Q7 /// ENSBTAT00000015674 // Q401B6 /// ENSBTAT00000015674 // Q401B4 /// ENSBTAT00000015674 // Q401B2 /// ENSBTAT00000015674 // C6KEF7 /// NM_001009428 // O18830 /// NM_001009428 // B2RG97 /// NM_001009428 // B6ETP0 /// NM_001009428 // Q19BJ5 /// AM992883 // Q19BJ5 /// AM992883 // O18830 /// AM992883 // B2RG97 /// AM992883 // B6ETP0 ENSBTAT00000015674 // Bt.605 // brain| muscle|fetus| calf /// NM_001009428 // Oar.563 // --- /// AM992883 // Oar.563 // --- ENSBTAT00000015674 // GO:0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// ENSBTAT00000015674 // GO:0040007 // growth // inferred from electronic annotation /// ENSBTAT00000015674 // GO:0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// NM_001009428 // GO:0040007 // growth // inferred from electronic annotation /// AM992883 // GO:0040007 // growth // inferred from electronic annotation ENSBTAT00000015674 // GO:0005615 // extracellular space // inferred from electronic annotation /// ENSBTAT00000015674 // GO:0005576 // extracellular region // inferred from electronic annotation /// NM_001009428 // GO:0005576 // extracellular region // inferred from electronic annotation /// NM_001009428 // GO:0005615 // extracellular space // inferred from electronic annotation /// AM992883 // GO:0005576 // extracellular region // inferred from electronic annotation /// AM992883 // GO:0005615 // extracellular space // inferred from electronic annotation ENSBTAT00000015674 // GO:0005125 // cytokine activity // inferred from electronic annotation /// ENSBTAT00000015674 // GO:0008083 // growth factor activity // inferred from electronic annotation /// ENSBTAT00000015674 // GO:0008201 // heparin binding // inferred from electronic annotation /// ENSBTAT00000015674 // GO:0005515 // protein binding // inferred from electronic annotation /// ENSBTAT00000015674 // GO:0005102 // receptor binding // inferred from electronic annotation /// NM_001009428 // GO:0005125 // cytokine activity // inferred from electronic annotation /// NM_001009428 // GO:0008083 // growth factor activity // inferred from electronic annotation /// NM_001009428 // GO:0008201 // heparin binding // inferred from electronic annotation /// AM992883 // GO:0008083 // growth factor activity // inferred from electronic annotation /// AM992883 // GO:0005125 // cytokine activity // inferred from electronic annotation /// AM992883 // GO:0008201 // heparin binding // inferred from electronic annotation --- ENSBTAT00000015674 // Pfam // IPR001111 // Transforming growth factor-beta, N-terminal /// ENSBTAT00000015674 // Pfam // IPR001839 // Transforming growth factor-beta, C-terminal 1 main
14708966 14708966 scaffold_10(-):2329916-2443036 scaffold_10 - 2329916 2443036 24 XM_004004498 // HIBCH // 3-hydroxyisobutyryl-CoA hydrolase // --- // 101111161 XM_004004498 // RefSeq // PREDICTED: Ovis aries 3-hydroxyisobutyryl-CoA hydrolase (HIBCH), mRNA. // scaffold_10 // 100 // 100 // 24 // 24 // 0 /// ENSBTAP00000045313 // CSIRO // [mRNA] locus=scaffold10:2329916:2443036:- // scaffold_10 // 100 // 100 // 24 // 24 // 0 --- --- --- --- --- --- --- 1 main
14708980 14708980 scaffold_10(-):2613966-2623140 scaffold_10 - 2613966 2623140 22 --- GLEAN_10020000 // CSIRO // [mRNA] locus=scaffold10:2613966:2623140:- // scaffold_10 // 100 // 100 // 22 // 22 // 0 --- --- --- --- --- --- --- 1 main
14708985 14708985 scaffold_10(-):2624433-2639887 scaffold_10 - 2624433 2639887 21 XM_004005354 // TMEM194B // transmembrane protein 194B // --- // 101119376 /// ENSBTAT00000020811 // TMEM194B // transmembrane protein 194B // --- // 506133 XM_004005354 // RefSeq // PREDICTED: Ovis aries transmembrane protein 194B (TMEM194B), mRNA. // scaffold_10 // 100 // 100 // 21 // 21 // 0 /// ENSBTAT00000020811 // CSIRO // [mRNA] locus=scaffold10:2624433:2639887:- gene:ENSBTAG00000015678 // scaffold_10 // 100 // 100 // 21 // 21 // 0 ENSBTAT00000020811 // F1MML1 ENSBTAT00000020811 // Bt.59875 // --- --- --- --- --- --- 1 main

Total number of rows: 24595

Table truncated, full table size 36382 Kbytes.




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