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Platform GPL21056 Query DataSets for GPL21056
Status Public on Oct 22, 2015
Title Agilent-021113 Tobacco Gene Expression Microarray (Probe Name version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Nicotiana tabacum
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16021113 or 2521113.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 22, 2015
Last update date May 22, 2018
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (51) GSM1915758, GSM1915759, GSM1915760, GSM1915761, GSM1915762, GSM1915763 
Series (7)
GSE74260 Gene expression signatures of transgenic and wild-type tobaccos under normal or salt-stress conditions
GSE84721 Gene expression analysis for OpAP2-3 lines in Nicotiana tabaccum cv Xanthi
GSE113772 Differential gene expression and physiological changes during acute or persistent plant virus interactions may contribute to viral symptom differences (microarray)
Relations
Alternative to GPL10098

Data table header descriptions
ID Agilent probe name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_LIST GenBank Accession number
UNIGENE_ID UnigeneID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE GB_LIST UNIGENE_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE
A_95_P000026 FALSE EB439159 Nta.7233 gb|EB439159|ta|TA12221_4097|ta|TA12220_4097|tc|TC41479 unmapped KN6B.102M01F.051230T7 KN6B Nicotiana tabacum cDNA clone KN6B.102M01, mRNA sequence [EB439159] CTGTTCATTGTTGGGGTTTTGTTGAACCATGTCTACGGAGACTGTAACTTTTTATTTATT
A_95_P000031 FALSE DV998757,EB441017,CV016471 Nta.7598 gb|DV998757|gb|EB441017|ta|TA11936_4097|ta|CV016471 unmapped KL4B.100B07F.050922T7 KL4B Nicotiana tabacum cDNA clone KL4B.100B07, mRNA sequence [DV998757] GCTGATACTGTATCTACCTTAAATGATGTTTTGGCCAACCTTGGTTAAAAAAGCTTTTCT
A_95_P000051 FALSE FG625247,FG200987 Nta.9461 gb|FG625247|gb|FG200987|ta|TA11652_4097|tc|TC57536 unmapped TOBESTR046E09 TOBEST cDNA library 1 Nicotiana tabacum cDNA 5', mRNA sequence [FG625247] GTATGAAAGGAAGCTGATTTGGGCTGTAACACGAACTTATCAATATATATCTCCTCTTTT
A_95_P000056 FALSE EH620863,CV018929 Nta.2714 gb|EH620863|gb|CV018929|ta|TA11773_4097|ta|TA11770_4097 unmapped CHO_SL007xp22f1.ab1 CHO_SL Nicotiana tabacum cDNA, mRNA sequence [EH620863] GCCATTCGGTTCTTATGGATGGTTGGTCATGTAATGTTTTGTTGTACAATATATTGTGAT
A_95_P000061 FALSE DW000215 Nta.3717 gb|DW000215|ta|TA12285_4097|tc|TC43782 unmapped KL4B.105D03F.051104T7 KL4B Nicotiana tabacum cDNA clone KL4B.105D03, mRNA sequence [DW000215] CCTGAATTCGGTATTGTGAACCTATGACGTGTTGAACTTTTTTGTTTTGTATTCCAAGTG
A_95_P000076 FALSE EB427804,EB678610 Nta.624 gb|EB427804|gb|EB678610|ta|TA12991_4097|tc|TC40336 unmapped KF8B.100C03F.051010T7 KF8 Nicotiana tabacum cDNA clone KF8B.100C03, mRNA sequence [EB427804] CGATGACGTCAGTCCAACATTGCCCATAACTCAATTGTAACTAATGCTACTATTAATTAA
A_95_P000086 FALSE FG135946 Nta.9673 gb|FG135946|ta|TA14980_4097|ta|TA14981_4097|tc|TC56589 unmapped AGN_ELP009xk18f1.ab1 AGN_ELP Nicotiana tabacum cDNA 5', mRNA sequence [FG135946] AGTCTTACTATGTTAATTATGGTGGTGGTGCCAATGAGCTTGCAACAGGCTACAGCACTG
A_95_P000091 FALSE AJ717873,FG638714 Nta.9864 gb|AJ717873|gb|FG638714|ta|TA13471_4097|tc|TC52133 unmapped Nicotiana tabacum cDNA-AFLP-fragment BSTT12-4-420, cultivar Bright Yellow 2 [AJ717873] TTGGGTACTTGGGGCTGAAAAATGTTAGGTTTCTAAGTTTTTGCTTGTTCAATGATGTAT
A_95_P000096 FALSE EH619820 Nta.9918 gb|EH619820|ta|TA17720_4097|tc|TC54943 unmapped CHO_SL022xi08f1.ab1 CHO_SL Nicotiana tabacum cDNA, mRNA sequence [EH619820] GAGCAGGCCATGAAGAGAGATGTCAGGATGAAATACTTTCTGTAAACTACTTTTTTGTAT
A_95_P000101 FALSE FG167017,BP535232 Nta.14783 gb|FG167017|ta|TA12397_4097|ta|BP535232|tc|TC52059 unmapped AGN_RNC008xp03f1.ab1 AGN_RNC Nicotiana tabacum cDNA 5', mRNA sequence [FG167017] TTAGGGTTATTGGGTAACTAGGCTTATCTGGGAAATTTGGGAAACTAGTTTTCCTTCTTT
A_95_P000116 FALSE FG157904 Nta.17899 gb|FG157904|tc|TC43501 unmapped AGN_RNC025xl24f1.ab1 AGN_RNC Nicotiana tabacum cDNA 5', mRNA sequence [FG157904] ATCAATCCCCTGAACTCGATCAGAAATTCCCGTTGTCAGTGGACCCTTCTTTTGAAGGTT
A_95_P000121 FALSE X52744,CV019535 Nta.7741 gb|X52744|ta|TA11628_4097|ta|TA11670_4097|ta|CV019535 unmapped Tabacco Cab40 mRNA for major chlorophyll a [X52744] GGGCTATGGGTTCAGTAAAGGGATTGGTATGTGATGTAAATTGGTTTGGATTAATGAAGA
A_95_P000126 FALSE EH621670,EB426036 Nta.2844 gb|EH621670|ta|TA11637_4097|ta|TA11648_4097|ta|EB426036 unmapped CHO_SL025xf23f1.ab1 CHO_SL Nicotiana tabacum cDNA, mRNA sequence [EH621670] CTCGTGTGACGTGGCTTTTCTGTTTGTTAATTGGGTTGTGTATCAATATACTACATAAGT
A_95_P000146 FALSE X52743 Nta.2705 gb|X52743|ta|TA11659_4097|tc|TC43941 unmapped Tabacco Cab21 mRNA for major chlorophyll a [X52743] GATGGCCTTGTAAAGCTGTCGTGCGTTACCTGATAATATAATGAGATTTTGTTTGTGTTC
A_95_P000151 FALSE EB439967,EB437356 Nta.2844 ta|TA11667_4097|ta|TA11661_4097|ta|EB439967|ta|EB437356 unmapped CTGCTGTGACGTGGCTTTTCTGTTTGTTGTCAATATACTATATAAGTTTGTTTGTGTCTT
A_95_P000156 FALSE CV018679 Nta.2844 ta|TA11669_4097|ta|TA11636_4097|ta|CV018679|tc|TC56710 unmapped Rep: Metallothionein-like protein type 2 - Nicotiana plumbaginifolia (Leadwort-leaved tobacco), complete [TC56710] TTTCTCAATCTGATATATTTCTGTAACGTGATTTGGGGTGTAATGTAACAGAAACGTGTC
A_95_P000166 FALSE EH618220 Nta.5457 gb|EH618220|ta|TA11672_4097|ta|TA11694_4097|ta|TA11685_4097 unmapped CHO_SL011xb21f1.ab1 CHO_SL Nicotiana tabacum cDNA, mRNA sequence [EH618220] CCGGCTGTCTTTCAACTTTGTGGTACTGTAATTTTAATTCTTGGCAATAAATAGTACTAC
A_95_P000171 ta|TA11676_4097|tc|TC53578 FALSE ta|TA11676_4097|tc|TC53578 unmapped Rep: Peptidyl-prolyl cis-trans isomerase - Solanum lycopersicum (Tomato) (Lycopersicon esculentum), complete [TC53578] GTGCTGTAATTGGTATTAGCCTGCTTCTACCAGTTTATGTTTAATCTTAAGACTATGGTT
A_95_P000176 FALSE EH621322 Nta.9367 gb|EH621322|ta|TA11679_4097|ta|TA11682_4097|ta|TA11677_4097 unmapped CHO_SL028xk14f1.ab1 CHO_SL Nicotiana tabacum cDNA, mRNA sequence [EH621322] CCAAATCCAATTAAATCTAATTCGCGTTGCATAGGTTCTACTACAGTTAGACCTCTTTAT
A_95_P000191 FALSE EH623972 Nta.2894 gb|EH623972|ta|TA11686_4097|tc|TC45260 unmapped CHO_SL019xi02f1.ab1 CHO_SL Nicotiana tabacum cDNA, mRNA sequence [EH623972] CATGATAATGTCCTTGTTACCGGGTTGTGGGGACAAAGATATCAACATCAGAAAAAACGT

Total number of rows: 43819

Table truncated, full table size 8241 Kbytes.




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