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Platform GPL21561 Query DataSets for GPL21561
Status Public on Mar 04, 2016
Title Agilent-031795 L.lactis_and_2_phages
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Lactococcus lactis
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description L. lactis + 2 phages

Arrays of this design have barcodes that begin with 16031795 or 2531795.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Mar 03, 2016
Last update date Mar 04, 2016
Contact name Mogens Kilstrup
E-mail(s) mki@bio.dtu.dk
Phone +45 25538815
Organization name Technical University of Denmark
Department DTU Systems Biology
Lab Metabolic Signaling and Regulation
Street address Building 301 room 158
City Kgs. Lyngby
ZIP/Postal code DK2800
Country Denmark
 
Samples (26) GSM2080392, GSM2080393, GSM2080394, GSM2080395, GSM2080396, GSM2080397 
Series (2)
GSE78882 Gene expression signature after abrupt glucose starvation in Lactococcus lactis
GSE89508 Gene expression signature in Lactococcus lactis after ethanol, butanol or hexanol exposure

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 llmg_1919_1 llmg_1919_1 FALSE unmapped TATTATTGATTACAATGACGGATACGATAGGAGGAATGCAAGCTTTAGCACCAAAAGCC
5 96 156 llmg_0444_2 llmg_0444_2 FALSE unmapped TAGTGGTTGCTGGTGAAGAAGCTGGAAGTAAATTGACAAAAGCTCAAGATTTAGGAATC
6 96 154 llmg_1833_4 llmg_1833_4 FALSE unmapped AAGATATCCACAAATTACATTTGCTCTTGATGCCAATCGAAGTTTTCAACTGACAGACT
7 96 152 llmg_2370_4 llmg_2370_4 FALSE unmapped CAAAATTCTCAACACAAGCTTATACTCGTTGCGAACGTTGCGGACGTCCACATTCAGTT
8 96 150 llmg_pseudo_225 llmg_pseudo_225 FALSE unmapped ATATGGACCAAGTGTTTGGTGCAGCATTAAAGACTGTGGAGAAAGAATTCAATGAGTAAT
9 96 148 llmg_rRNA_305 llmg_rRNA_305 FALSE unmapped GGAGGACCATCTCCCAACCCTAAATACTCCTTAGTGACCGATAGTGAACCAGTACCGTGA
10 96 146 llmg_0704_3 llmg_0704_3 FALSE unmapped ACCGAGTAAATCATAAATATGTATTTTCACAAACAAGAGGTGCAATGGGTGCAGCTATTT
11 96 144 llmg_0972_5 llmg_0972_5 FALSE unmapped GAGTTAAACATTGGCATGGAGCGACTAAGGATAGTTGGTTTAGTCATGTCGCCATTACA
12 96 142 llmg_0961_4 llmg_0961_4 FALSE unmapped CTATTGGACTTTTAAACGTCACTTCCGTTTTAGACCCAGACCTAATCTTGATAGGTGGC
13 96 140 llmg_0219_5 llmg_0219_5 FALSE unmapped CGATTCGTTTGGTTCGTAAAGATAGAGCAGAAATAAGACATATGTTAAAATGGTTCATTT
14 96 138 llmg_2154_4 llmg_2154_4 FALSE unmapped ACTTTGGTTGAAAAACGTGAGTTGGAACGTTTGCAAGCGAAAATGAAGGAACAACTTAT
15 96 136 llmg_0538_2 llmg_0538_2 FALSE unmapped GACTCCTGGTGATGTCATGAAACTTGAATTTGAAATTACAAAGTTCCGTGGAAAAGTAG
16 96 134 llmg_tRNA_224 llmg_tRNA_224 FALSE unmapped CTTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGACTATATTATTAAAACTCGGG
17 96 132 llmg_0650_4 llmg_0650_4 FALSE unmapped TCCCCTTCTTCTCTCTTGGAATGGGCTGGATTCTCCTAGCAGTCCTTGGATTTATAATC
18 96 130 llmg_2290_5 llmg_2290_5 FALSE unmapped GTTAGTGATTTGCCAATCGGTTTTTATCCAGATGATGAAGTTGCGAAAAATTTTGAAGT
19 96 128 llmg_1580_1 llmg_1580_1 FALSE unmapped TTTGAAATTTTCGGCAAAACTGCTTGAAGTGGCTATTTATGAAAGTGATGAACTCTACTG
20 96 126 llmg_0059_5 llmg_0059_5 FALSE unmapped TCGCAGAATGATAACAGCAAATATGATTCAGTCATTTCAGATTTAAAGTCAGAACTTGCA

Total number of rows: 15744

Table truncated, full table size 1685 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL21561_031795_D_GEO_20101220.txt.gz 489.7 Kb (ftp)(http) TXT

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