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Platform GPL21593 Query DataSets for GPL21593
Status Public on Mar 14, 2016
Title [RUSGene-1_0-st] Affymetrix Rice (US) Gene 1.0 ST Array [transcript (gene) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Oryza sativa
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

Annotation from RUSGene-1_0-st-v1.na34.rgap7.transcript.csv:
#%create_date=Thu Apr 3 00:35:47 2014 PDT
#%chip_type=RUSGene-1_0-st-v1
#%lib_set_name=RUSGene-1_0-st
#%lib_set_version=v1
#%genome-version=rgap7
#%genome-version-ucsc=rgap7
#%genome-lifted-method=None
#%genome-lifted_from-version-ucsc=rgap7
#%netaffx-annotation-date=2014-02-18
#%netaffx-annotation-netaffx-build=34
#%netaffx-annotation-tabular-data-version=1.1
#%netaffx-annotation-tabular-format-version=1.1
#%netaffx-annotation-data-type=transcript_cluster
 
Submission date Mar 14, 2016
Last update date Mar 08, 2018
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (58) GSM2088150, GSM2088151, GSM2088152, GSM2088153, GSM2088154, GSM2088155 
Series (5)
GSE79212 Gene expression analysis in wild-type and OsHOX24 rice overexpression line under control and drought stress conditions
GSE107463 The effect of OsWOX4 knockdown on the expression profile in rice the leaf primordia and the SAM
GSE111019 Gene expression data obtained from Oryza sativa adventitious roots (2-6 cm behind the root tip) grown in nutrient solution with (30 mgL-1) and without (3 mgL-1) Si

Data table header descriptions
ID transcript cluster id
probeset_id
seqname
strand
start
stop
total_probes
gene_assignment
mrna_assignment
swissprot
unigene
GO_biological_process
GO_cellular_component
GO_molecular_function
pathway
protein_domains
crosshyb_type
category
SPOT_ID
GB_ACC

Data table
ID probeset_id seqname strand start stop total_probes gene_assignment mrna_assignment swissprot unigene GO_biological_process GO_cellular_component GO_molecular_function pathway protein_domains crosshyb_type category SPOT_ID GB_ACC
15795586 15795586 chr1 + 1903 9817 34 AK242339 // Os01g0100100 // Os01g0100100 // --- // 4326813 /// NM_001048268 // Os01g0100100 // Os01g0100100 // --- // 4326813 LOC_Os01g01010.1 // Rice Genome Annotation Project at MSU // cDNA|TBC domain containing protein, expressed gene:LOC_Os01g01010 // chr1 // 120 // 120 // 6 // 5 // 0 /// LOC_Os01g01010.2 // Rice Genome Annotation Project at MSU // cDNA|TBC domain containing protein, expressed gene:LOC_Os01g01010 // chr1 // 120 // 120 // 6 // 5 // 0 /// BGIOSGA002569-TA // BGI Rice Genome // locus=Chr01:30220:36442:+ gene:BGIOSGA002569 // chr1 // 133 // 133 // 4 // 3 // 0 /// AK242339 // GenBank // Oryza sativa Japonica Group cDNA, clone: J075199P03, full insert sequence. // chr1 // 125 // 125 // 15 // 12 // 0 /// NM_001048268 // RefSeq // Oryza sativa Japonica Group Os01g0100100 (Os01g0100100) mRNA, complete cds. // chr1 // 100 // 100 // 16 // 16 // 0 /// Os01t0100100-01 // Rice Annotation Project Database // RabGAP/TBC domain containing protein. // chr1 // 133 // 133 // 4 // 3 // 0 LOC_Os01g01010.1 // B8ACR0 /// LOC_Os01g01010.1 // Q655M0 /// BGIOSGA002569-TA // B8ACR0 /// NM_001048268 // Q0JRI1 AK242339 // Os.24643 // callus| flower| leaf| panicle| seed| stem /// NM_001048268 // Os.24643 // callus| flower| leaf| panicle| seed| stem LOC_Os01g01010.1 // GO:0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// LOC_Os01g01010.1 // GO:0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// LOC_Os01g01010.2 // GO:0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// BGIOSGA002569-TA // GO:0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// BGIOSGA002569-TA // GO:0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// NM_001048268 // GO:0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// NM_001048268 // GO:0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation LOC_Os01g01010.1 // GO:0005622 // intracellular // inferred from electronic annotation /// LOC_Os01g01010.2 // GO:0005622 // intracellular // inferred from electronic annotation /// BGIOSGA002569-TA // GO:0005622 // intracellular // inferred from electronic annotation LOC_Os01g01010.1 // GO:0005097 // Rab GTPase activator activity // inferred from electronic annotation /// LOC_Os01g01010.2 // GO:0005097 // Rab GTPase activator activity // inferred from electronic annotation /// BGIOSGA002569-TA // GO:0005097 // Rab GTPase activator activity // inferred from electronic annotation /// NM_001048268 // GO:0005097 // Rab GTPase activator activity // inferred from electronic annotation --- LOC_Os01g01010.1 // Pfam // IPR000195 // Rab-GTPase-TBC domain /// LOC_Os01g01010.2 // Pfam // IPR000195 // Rab-GTPase-TBC domain /// BGIOSGA002569-TA // Pfam // IPR000195 // Rab-GTPase-TBC domain 1 main LOC_Os01g01010.1
15795607 15795607 chr1 + 10218 11435 22 NM_001185187 // Os01g0100200 // Os01g0100200 // --- // 4326453 NM_001185187 // RefSeq // Oryza sativa Japonica Group Os01g0100200 (Os01g0100200) mRNA, complete cds. // chr1 // 100 // 100 // 6 // 6 // 0 NM_001185187 // Q655L9 NM_001185187 // Os.37240 // leaf| stem --- NM_001185187 // GO:0009536 // plastid // inferred from reviewed computational analysis --- --- --- 1 main NM_001185187
15795612 15795612 chr1 + 11648 14915 25 AK101455 // Os01g0100400 // Os01g0100400 // --- // 4326454 /// NM_001048270 // Os01g0100400 // Os01g0100400 // --- // 4326454 LOC_Os01g01030.1 // Rice Genome Annotation Project at MSU // cDNA|monocopper oxidase, putative, expressed gene:LOC_Os01g01030 // chr1 // 100 // 100 // 7 // 7 // 0 /// BGIOSGA002571-TA // BGI Rice Genome // locus=Chr01:39545:42130:+ gene:BGIOSGA002571 // chr1 // 100 // 100 // 6 // 6 // 0 /// AK101455 // GenBank // Oryza sativa Japonica Group cDNA clone:J033040A20, full insert sequence. // chr1 // 100 // 100 // 3 // 3 // 0 /// NM_001048270 // RefSeq // Oryza sativa Japonica Group Os01g0100400 (Os01g0100400) mRNA, complete cds. // chr1 // 125 // 125 // 10 // 8 // 0 LOC_Os01g01030.1 // B8ACR3 /// LOC_Os01g01030.1 // Q655L8 /// BGIOSGA002571-TA // B8ACR3 /// AK101455 // Q655L8 /// NM_001048270 // Q655L8 AK101455 // Os.33183 // callus| flower| leaf| panicle| root| stem /// NM_001048270 // Os.33183 // callus| flower| leaf| panicle| root| stem LOC_Os01g01030.1 // GO:0055114 // oxidation-reduction process // inferred from electronic annotation /// BGIOSGA002571-TA // GO:0055114 // oxidation-reduction process // inferred from electronic annotation /// AK101455 // GO:0055114 // oxidation-reduction process // inferred from electronic annotation /// NM_001048270 // GO:0055114 // oxidation-reduction process // inferred from electronic annotation LOC_Os01g01030.1 // GO:0005886 // plasma membrane // inferred from electronic annotation /// LOC_Os01g01030.1 // GO:0009506 // plasmodesma // inferred from electronic annotation /// BGIOSGA002571-TA // GO:0005886 // plasma membrane // inferred from electronic annotation /// BGIOSGA002571-TA // GO:0009506 // plasmodesma // inferred from electronic annotation /// AK101455 // GO:0005886 // plasma membrane // inferred from electronic annotation /// AK101455 // GO:0009506 // plasmodesma // inferred from electronic annotation /// NM_001048270 // GO:0005886 // plasma membrane // inferred from electronic annotation /// NM_001048270 // GO:0009506 // plasmodesma // inferred from electronic annotation LOC_Os01g01030.1 // GO:0005507 // copper ion binding // inferred from electronic annotation /// LOC_Os01g01030.1 // GO:0016491 // oxidoreductase activity // inferred from electronic annotation /// BGIOSGA002571-TA // GO:0005507 // copper ion binding // inferred from electronic annotation /// BGIOSGA002571-TA // GO:0016491 // oxidoreductase activity // inferred from electronic annotation /// AK101455 // GO:0005507 // copper ion binding // inferred from electronic annotation /// AK101455 // GO:0016491 // oxidoreductase activity // inferred from electronic annotation /// NM_001048270 // GO:0005507 // copper ion binding // inferred from electronic annotation /// NM_001048270 // GO:0016491 // oxidoreductase activity // inferred from electronic annotation --- LOC_Os01g01030.1 // Pfam // IPR001117 // Multicopper oxidase, type 1 /// LOC_Os01g01030.1 // Pfam // IPR011706 // Multicopper oxidase, type 2 /// LOC_Os01g01030.1 // Pfam // IPR011707 // Multicopper oxidase, type 3 /// BGIOSGA002571-TA // Pfam // IPR001117 // Multicopper oxidase, type 1 /// BGIOSGA002571-TA // Pfam // IPR011706 // Multicopper oxidase, type 2 /// BGIOSGA002571-TA // Pfam // IPR011707 // Multicopper oxidase, type 3 1 main LOC_Os01g01030.1
15795622 15795622 chr1 + 15292 19323 27 AK067316 // Os01g0100500 // Os01g0100500 // --- // 4326455 LOC_Os01g01040.4 // Rice Genome Annotation Project at MSU // cDNA|expressed protein gene:LOC_Os01g01040 // chr1 // 100 // 100 // 4 // 4 // 0 /// LOC_Os01g01040.1 // Rice Genome Annotation Project at MSU // cDNA|expressed protein gene:LOC_Os01g01040 // chr1 // 133 // 133 // 4 // 3 // 0 /// LOC_Os01g01040.2 // Rice Genome Annotation Project at MSU // cDNA|expressed protein gene:LOC_Os01g01040 // chr1 // 100 // 100 // 6 // 6 // 0 /// BGIOSGA002572-TA // BGI Rice Genome // locus=Chr01:43370:46364:+ gene:BGIOSGA002572 // chr1 // 100 // 100 // 2 // 2 // 0 /// AK067316 // GenBank // Oryza sativa Japonica Group cDNA clone:J013104J17, full insert sequence. // chr1 // 133 // 133 // 4 // 3 // 0 /// Os01t0100500-01 // Rice Annotation Project Database // Immunoglobulin-like domain containing protein. // chr1 // 200 // 200 // 2 // 1 // 0 LOC_Os01g01040.1 // A2WJL2 /// LOC_Os01g01040.1 // Q93VG6 /// LOC_Os01g01040.2 // A2WJL2 /// LOC_Os01g01040.2 // Q93VG6 /// BGIOSGA002572-TA // A2WJL2 AK067316 // Os.27571 // callus| flower| leaf| panicle| root| seed| stem LOC_Os01g01040.1 // GO:0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// LOC_Os01g01040.1 // GO:0008150 // biological_process // inferred from electronic annotation /// LOC_Os01g01040.1 // GO:0016558 // protein import into peroxisome matrix // inferred from electronic annotation /// LOC_Os01g01040.2 // GO:0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// LOC_Os01g01040.2 // GO:0008150 // biological_process // inferred from electronic annotation /// LOC_Os01g01040.2 // GO:0016558 // protein import into peroxisome matrix // inferred from electronic annotation /// BGIOSGA002572-TA // GO:0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// BGIOSGA002572-TA // GO:0008150 // biological_process // inferred from electronic annotation /// BGIOSGA002572-TA // GO:0016558 // protein import into peroxisome matrix // inferred from electronic annotation --- LOC_Os01g01040.1 // GO:0003674 // molecular_function // inferred from electronic annotation /// LOC_Os01g01040.2 // GO:0003674 // molecular_function // inferred from electronic annotation /// BGIOSGA002572-TA // GO:0003674 // molecular_function // inferred from electronic annotation --- --- 1 main LOC_Os01g01040.4
15795638 15795638 chr1 + 21841 25971 26 AK121362 // Os01g0100600 // Os01g0100600 // --- // 4326456 LOC_Os01g01050.1 // Rice Genome Annotation Project at MSU // cDNA|R3H domain containing protein, expressed gene:LOC_Os01g01050 // chr1 // 100 // 100 // 3 // 3 // 0 /// AK121362 // GenBank // Oryza sativa Japonica Group cDNA clone:J023124E16, full insert sequence. // chr1 // 100 // 100 // 2 // 2 // 0 AK121362 // Q655L7 AK121362 // Os.59545 // flower| leaf| stem --- --- LOC_Os01g01050.1 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// AK121362 // GO:0003676 // nucleic acid binding // inferred from electronic annotation --- LOC_Os01g01050.1 // Pfam // IPR001374 // Single-stranded nucleic acid binding R3H /// LOC_Os01g01050.1 // Pfam // IPR024771 // SUZ domain 1 main LOC_Os01g01050.1
15795648 15795648 chr1 + 26136 27651 14 CT833925 // Os01g0100700 // Os01g0100700 // --- // 4326457 /// CT833926 // Os01g0100700 // Os01g0100700 // --- // 4326457 CT833925 // GenBank // Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042M23, full insert sequence. // chr1 // 75 // 75 // 3 // 4 // 0 /// CT833926 // GenBank // Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA118O11, full insert sequence. // chr1 // 75 // 75 // 3 // 4 // 0 CT833925 // Q93VC6 /// CT833926 // Q93VC6 CT833925 // Os.4725 // callus| flower| leaf| panicle| root| seed| stem /// CT833926 // Os.4725 // callus| flower| leaf| panicle| root| seed| stem CT833925 // GO:0006412 // translation // inferred from electronic annotation /// CT833926 // GO:0006412 // translation // inferred from electronic annotation CT833925 // GO:0005840 // ribosome // inferred from electronic annotation /// CT833925 // GO:0015935 // small ribosomal subunit // inferred from electronic annotation /// CT833925 // GO:0030529 // ribonucleoprotein complex // inferred from electronic annotation /// CT833926 // GO:0005840 // ribosome // inferred from electronic annotation /// CT833926 // GO:0015935 // small ribosomal subunit // inferred from electronic annotation /// CT833926 // GO:0030529 // ribonucleoprotein complex // inferred from electronic annotation CT833925 // GO:0003723 // RNA binding // inferred from electronic annotation /// CT833925 // GO:0003735 // structural constituent of ribosome // inferred from electronic annotation /// CT833926 // GO:0003723 // RNA binding // inferred from electronic annotation /// CT833926 // GO:0003735 // structural constituent of ribosome // inferred from electronic annotation --- --- 1 main CT833925
15795654 15795654 chr1 + 28818 33493 32 --- LOC_Os01g01070.3 // Rice Genome Annotation Project at MSU // cDNA|expressed protein gene:LOC_Os01g01070 // chr1 // 200 // 200 // 2 // 1 // 0 /// LOC_Os01g01070.2 // Rice Genome Annotation Project at MSU // cDNA|expressed protein gene:LOC_Os01g01070 // chr1 // 100 // 100 // 2 // 2 // 0 /// BGIOSGA002575-TA // BGI Rice Genome // locus=Chr01:56731:60911:+ gene:BGIOSGA002575 // chr1 // 133 // 133 // 4 // 3 // 0 LOC_Os01g01070.2 // B8ACR5 /// LOC_Os01g01070.2 // Q655L6 /// BGIOSGA002575-TA // B8ACR5 --- LOC_Os01g01070.3 // GO:0008152 // metabolic process // inferred from electronic annotation /// LOC_Os01g01070.2 // GO:0008152 // metabolic process // inferred from electronic annotation --- LOC_Os01g01070.3 // GO:0003824 // catalytic activity // inferred from electronic annotation /// LOC_Os01g01070.3 // GO:0005488 // binding // inferred from electronic annotation /// LOC_Os01g01070.2 // GO:0003824 // catalytic activity // inferred from electronic annotation /// LOC_Os01g01070.2 // GO:0005488 // binding // inferred from electronic annotation --- LOC_Os01g01070.3 // Pfam // IPR012458 // Protein of unknown function DUF1664 /// LOC_Os01g01070.2 // Pfam // IPR012458 // Protein of unknown function DUF1664 /// BGIOSGA002575-TA // Pfam // IPR012458 // Protein of unknown function DUF1664 1 main LOC_Os01g01070.3
15795673 15795673 chr1 + 34581 40180 32 AK243573 // Os01g0100900 // Os01g0100900 // --- // 4326459 /// EU152208 // Os01g0100900 // Os01g0100900 // --- // 4326459 LOC_Os01g01080.1 // Rice Genome Annotation Project at MSU // cDNA|decarboxylase, putative, expressed gene:LOC_Os01g01080 // chr1 // 100 // 100 // 2 // 2 // 0 /// LOC_Os01g01080.3 // Rice Genome Annotation Project at MSU // cDNA|decarboxylase, putative, expressed gene:LOC_Os01g01080 // chr1 // 100 // 100 // 2 // 2 // 0 /// AK243573 // GenBank // Oryza sativa Japonica Group cDNA, clone: J100082C01, full insert sequence. // chr1 // 133 // 133 // 4 // 3 // 0 /// EU152208 // GenBank HTC // Oryza sativa Japonica Group clone OsLS251 sphingosine 1-phosphate lyase mRNA, complete cds. // chr1 // 100 // 100 // 2 // 2 // 0 LOC_Os01g01080.1 // B1NY92 /// LOC_Os01g01080.1 // B7FAK6 /// LOC_Os01g01080.1 // B8ACR6 /// AK243573 // B7FAK6 /// AK243573 // Q52RG7 /// AK243573 // B1NY92 /// EU152208 // B1NY92 /// EU152208 // Q52RG7 /// EU152208 // B7FAK6 AK243573 // Os.21356 // callus| flower| leaf| panicle| root| seed| stem /// EU152208 // Os.21356 // callus| flower| leaf| panicle| root| seed| stem LOC_Os01g01080.1 // GO:0006915 // apoptotic process // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0006629 // lipid metabolic process // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0030149 // sphingolipid catabolic process // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0009407 // toxin catabolic process // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0051788 // response to misfolded protein // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0080129 // proteasome core complex assembly // inferred from electronic annotation /// LOC_Os01g01080.3 // GO:0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// AK243573 // GO:0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// AK243573 // GO:0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// AK243573 // GO:0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// AK243573 // GO:0009407 // toxin catabolic process // inferred from electronic annotation /// AK243573 // GO:0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// AK243573 // GO:0030149 // sphingolipid catabolic process // inferred from electronic annotation /// AK243573 // GO:0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// AK243573 // GO:0051788 // response to misfolded protein // inferred from electronic annotation /// AK243573 // GO:0080129 // proteasome core complex assembly // inferred from electronic annotation /// AK243573 // GO:0006629 // lipid metabolic process // inferred from electronic annotation /// AK243573 // GO:0006665 // sphingolipid metabolic process // inferred from electronic annotation /// AK243573 // GO:0006915 // apoptotic process // inferred from electronic annotation /// EU152208 // GO:0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// EU152208 // GO:0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// EU152208 // GO:0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// EU152208 // GO:0009407 // toxin catabolic process // inferred from electronic annotation /// EU152208 // GO:0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// EU152208 // GO:0030149 // sphingolipid catabolic process // inferred from electronic annotation /// EU152208 // GO:0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// EU152208 // GO:0051788 // response to misfolded protein // inferred from electronic annotation /// EU152208 // GO:0080129 // proteasome core complex assembly // inferred from electronic annotation /// EU152208 // GO:0006629 // lipid metabolic process // inferred from electronic annotation /// EU152208 // GO:0006665 // sphingolipid metabolic process // inferred from electronic annotation /// EU152208 // GO:0006915 // apoptotic process // inferred from electronic annotation LOC_Os01g01080.1 // GO:0016021 // integral to membrane // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0016020 // membrane // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0005783 // endoplasmic reticulum // inferred from electronic annotation /// AK243573 // GO:0005783 // endoplasmic reticulum // inferred from electronic annotation /// AK243573 // GO:0016020 // membrane // inferred from electronic annotation /// AK243573 // GO:0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// AK243573 // GO:0016021 // integral to membrane // inferred from electronic annotation /// EU152208 // GO:0005783 // endoplasmic reticulum // inferred from electronic annotation /// EU152208 // GO:0016020 // membrane // inferred from electronic annotation /// EU152208 // GO:0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// EU152208 // GO:0016021 // integral to membrane // inferred from electronic annotation LOC_Os01g01080.1 // GO:0003824 // catalytic activity // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0008117 // sphinganine-1-phosphate aldolase activity // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0016829 // lyase activity // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0016831 // carboxy-lyase activity // inferred from electronic annotation /// LOC_Os01g01080.1 // GO:0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// LOC_Os01g01080.3 // GO:0016831 // carboxy-lyase activity // inferred from electronic annotation /// LOC_Os01g01080.3 // GO:0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// AK243573 // GO:0003824 // catalytic activity // inferred from electronic annotation /// AK243573 // GO:0016829 // lyase activity // inferred from electronic annotation /// AK243573 // GO:0016831 // carboxy-lyase activity // inferred from electronic annotation /// AK243573 // GO:0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// AK243573 // GO:0008117 // sphinganine-1-phosphate aldolase activity // inferred from electronic annotation /// EU152208 // GO:0003824 // catalytic activity // inferred from electronic annotation /// EU152208 // GO:0016829 // lyase activity // inferred from electronic annotation /// EU152208 // GO:0016831 // carboxy-lyase activity // inferred from electronic annotation /// EU152208 // GO:0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// EU152208 // GO:0008117 // sphinganine-1-phosphate aldolase activity // inferred from electronic annotation --- LOC_Os01g01080.1 // Pfam // IPR002129 // Pyridoxal phosphate-dependent decarboxylase /// LOC_Os01g01080.3 // Pfam // IPR002129 // Pyridoxal phosphate-dependent decarboxylase 1 main LOC_Os01g01080.1
15795692 15795692 chr1 + 54914 56972 11 --- LOC_Os01g01110.1 // Rice Genome Annotation Project at MSU // cDNA|expressed protein gene:LOC_Os01g01110 // chr1 // 100 // 100 // 11 // 11 // 0 LOC_Os01g01110.1 // B8ACR7 /// LOC_Os01g01110.1 // Q93WB9 --- LOC_Os01g01110.1 // GO:0006468 // protein phosphorylation // inferred from electronic annotation --- LOC_Os01g01110.1 // GO:0004672 // protein kinase activity // inferred from electronic annotation /// LOC_Os01g01110.1 // GO:0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// LOC_Os01g01110.1 // GO:0005524 // ATP binding // inferred from electronic annotation /// LOC_Os01g01110.1 // GO:0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation --- LOC_Os01g01110.1 // Pfam // IPR000719 // Protein kinase, catalytic domain 1 main LOC_Os01g01110.1
15795694 15795694 chr1 + 57658 60090 19 --- BGIOSGA002578-TA // BGI Rice Genome // locus=Chr01:85444:87876:+ gene:BGIOSGA002578 // chr1 // 173 // 173 // 19 // 11 // 0 BGIOSGA002578-TA // B8ACR8 --- BGIOSGA002578-TA // GO:0008150 // biological_process // inferred from electronic annotation --- --- --- BGIOSGA002578-TA // Pfam // IPR002885 // Pentatricopeptide repeat 1 main BGIOSGA002578-TA
15795696 15795696 chr1 + 61059 64537 26 AK104517 // Os01g0101200 // Os01g0101200 // --- // 4326460 /// AK119457 // Os01g0101200 // Os01g0101200 // --- // 4326460 /// NM_001048276 // Os01g0101200 // Os01g0101200 // --- // 4326460 LOC_Os01g01120.1 // Rice Genome Annotation Project at MSU // cDNA|enolase-phosphatase E1, putative, expressed gene:LOC_Os01g01120 // chr1 // 267 // 267 // 8 // 3 // 0 /// LOC_Os01g01130.1 // Rice Genome Annotation Project at MSU // cDNA|snurportin-1, putative, expressed gene:LOC_Os01g01130 // chr1 // 100 // 100 // 1 // 1 // 0 /// BGIOSGA002579-TA // BGI Rice Genome // locus=Chr01:88890:90131:+ gene:BGIOSGA002579 // chr1 // 200 // 200 // 4 // 2 // 0 /// AK104517 // GenBank // Oryza sativa Japonica Group cDNA clone:006-303-C10, full insert sequence. // chr1 // 267 // 267 // 8 // 3 // 0 /// AK119457 // GenBank // Oryza sativa Japonica Group cDNA clone:001-133-E05, full insert sequence. // chr1 // 175 // 175 // 7 // 4 // 0 /// NM_001048276 // RefSeq // Oryza sativa Japonica Group Os01g0101200 (Os01g0101200) mRNA, partial cds. // chr1 // 150 // 150 // 3 // 2 // 0 LOC_Os01g01120.1 // B7EWK0 /// LOC_Os01g01120.1 // B8ACR9 /// LOC_Os01g01120.1 // Q0JRH3 /// LOC_Os01g01130.1 // A2ZN88 /// LOC_Os01g01130.1 // Q0JRH2 /// BGIOSGA002579-TA // B8ACR9 /// AK104517 // B7EWK0 /// AK119457 // B7EWK0 /// NM_001048276 // B7EWK0 /// NM_001048276 // Q0JRH3 AK104517 // Os.19507 // flower| leaf| panicle| root| stem /// AK119457 // Os.19507 // flower| leaf| panicle| root| stem /// NM_001048276 // Os.19507 // flower| leaf| panicle| root| stem LOC_Os01g01120.1 // GO:0008152 // metabolic process // inferred from electronic annotation /// LOC_Os01g01120.1 // GO:0019509 // L-methionine salvage from methylthioadenosine // inferred from electronic annotation /// BGIOSGA002579-TA // GO:0019509 // L-methionine salvage from methylthioadenosine // inferred from electronic annotation /// AK104517 // GO:0019509 // L-methionine salvage from methylthioadenosine // inferred from electronic annotation /// AK119457 // GO:0019509 // L-methionine salvage from methylthioadenosine // inferred from electronic annotation /// NM_001048276 // GO:0019509 // L-methionine salvage from methylthioadenosine // inferred from electronic annotation AK104517 // GO:0009536 // plastid // inferred from reviewed computational analysis /// AK119457 // GO:0009536 // plastid // inferred from reviewed computational analysis /// NM_001048276 // GO:0009536 // plastid // inferred from reviewed computational analysis LOC_Os01g01120.1 // GO:0003824 // catalytic activity // inferred from electronic annotation /// LOC_Os01g01120.1 // GO:0046872 // metal ion binding // inferred from electronic annotation /// LOC_Os01g01120.1 // GO:0043874 // acireductone synthase activity // inferred from electronic annotation /// LOC_Os01g01120.1 // GO:0000287 // magnesium ion binding // inferred from electronic annotation /// BGIOSGA002579-TA // GO:0000287 // magnesium ion binding // inferred from electronic annotation /// BGIOSGA002579-TA // GO:0043874 // acireductone synthase activity // inferred from electronic annotation /// AK104517 // GO:0000287 // magnesium ion binding // inferred from electronic annotation /// AK104517 // GO:0043874 // acireductone synthase activity // inferred from electronic annotation /// AK119457 // GO:0000287 // magnesium ion binding // inferred from electronic annotation /// AK119457 // GO:0043874 // acireductone synthase activity // inferred from electronic annotation /// NM_001048276 // GO:0000287 // magnesium ion binding // inferred from electronic annotation /// NM_001048276 // GO:0043874 // acireductone synthase activity // inferred from electronic annotation --- BGIOSGA002579-TA // Pfam // IPR023214 // HAD-like domain 1 main LOC_Os01g01120.1
15795704 15795704 chr1 + 68675 69131 18 --- LOC_Os01g01140.1 // Rice Genome Annotation Project at MSU // cDNA|expressed protein gene:LOC_Os01g01140 // chr1 // 100 // 100 // 18 // 18 // 0 /// BGIOSGA002580-TA // BGI Rice Genome // locus=Chr01:95516:95972:+ gene:BGIOSGA002580 // chr1 // 100 // 100 // 18 // 18 // 0 LOC_Os01g01140.1 // A2WJM0 /// LOC_Os01g01140.1 // Q7F2F6 /// BGIOSGA002580-TA // A2WJM0 --- BGIOSGA002580-TA // GO:0042742 // defense response to bacterium // inferred from electronic annotation /// BGIOSGA002580-TA // GO:0009870 // defense response signaling pathway, resistance gene-dependent // inferred from electronic annotation --- --- --- --- 1 main LOC_Os01g01140.1
15795706 15795706 chr1 + 71775 78938 29 AK103820 // Os01g0101600 // Os01g0101600 // --- // 4326462 /// AK122118 // Os01g0101600 // Os01g0101600 // --- // 4326462 /// NM_001048278 // Os01g0101600 // Os01g0101600 // --- // 4326462 LOC_Os01g01150.2 // Rice Genome Annotation Project at MSU // cDNA|RNA recognition motif, putative, expressed gene:LOC_Os01g01150 // chr1 // 100 // 100 // 3 // 3 // 0 /// LOC_Os01g01150.1 // Rice Genome Annotation Project at MSU // cDNA|RNA recognition motif, putative, expressed gene:LOC_Os01g01150 // chr1 // 109 // 109 // 12 // 11 // 0 /// LOC_Os01g01150.3 // Rice Genome Annotation Project at MSU // cDNA|RNA recognition motif, putative, expressed gene:LOC_Os01g01150 // chr1 // 100 // 100 // 3 // 3 // 0 /// BGIOSGA002581-TA // BGI Rice Genome // locus=Chr01:98744:102775:+ gene:BGIOSGA002581 // chr1 // 100 // 100 // 3 // 3 // 0 /// AK103820 // GenBank // Oryza sativa Japonica Group cDNA clone:J033147H07, full insert sequence. // chr1 // 100 // 100 // 9 // 9 // 0 /// AK122118 // GenBank // Oryza sativa Japonica Group cDNA clone:J033128C08, full insert sequence. // chr1 // 100 // 100 // 15 // 15 // 0 /// NM_001048278 // RefSeq // Oryza sativa Japonica Group Os01g0101600 (Os01g0101600) mRNA, complete cds. // chr1 // 107 // 107 // 15 // 14 // 0 /// Os01t0101600-01 // Rice Annotation Project Database // Immunoglobulin-like fold domain containing protein. // chr1 // 150 // 150 // 3 // 2 // 0 /// Os01t0101600-02 // Rice Annotation Project Database // Immunoglobulin-like fold domain containing protein. // chr1 // 100 // 100 // 3 // 3 // 0 BGIOSGA002581-TA // A2WJM1 /// AK103820 // Q655M5 /// AK122118 // Q655M5 /// NM_001048278 // Q655M5 AK103820 // Os.15960 // callus| flower| leaf| panicle| root| seed| stem /// AK122118 // Os.15960 // callus| flower| leaf| panicle| root| seed| stem /// NM_001048278 // Os.15960 // callus| flower| leaf| panicle| root| seed| stem LOC_Os01g01150.2 // GO:0042309 // homoiothermy // inferred from electronic annotation /// LOC_Os01g01150.2 // GO:0050826 // response to freezing // inferred from electronic annotation /// LOC_Os01g01150.1 // GO:0042309 // homoiothermy // inferred from electronic annotation /// LOC_Os01g01150.1 // GO:0050826 // response to freezing // inferred from electronic annotation /// LOC_Os01g01150.3 // GO:0042309 // homoiothermy // inferred from electronic annotation /// LOC_Os01g01150.3 // GO:0050826 // response to freezing // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0000911 // cytokinesis by cell plate formation // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0007155 // cell adhesion // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0008150 // biological_process // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0009887 // organ morphogenesis // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0009888 // tissue development // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0010090 // trichome morphogenesis // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0010228 // vegetative to reproductive phase transition of meristem // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0010638 // positive regulation of organelle organization // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0016926 // protein desumoylation // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0033044 // regulation of chromosome organization // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0045010 // actin nucleation // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0050665 // hydrogen peroxide biosynthetic process // inferred from electronic annotation --- LOC_Os01g01150.2 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// LOC_Os01g01150.2 // GO:0050825 // ice binding // inferred from electronic annotation /// LOC_Os01g01150.1 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// LOC_Os01g01150.1 // GO:0050825 // ice binding // inferred from electronic annotation /// LOC_Os01g01150.3 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// LOC_Os01g01150.3 // GO:0050825 // ice binding // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0000166 // nucleotide binding // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0005515 // protein binding // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0003723 // RNA binding // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0046872 // metal ion binding // inferred from electronic annotation /// BGIOSGA002581-TA // GO:0008270 // zinc ion binding // inferred from electronic annotation /// AK103820 // GO:0000166 // nucleotide binding // inferred from electronic annotation /// AK103820 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// AK103820 // GO:0003723 // RNA binding // inferred from electronic annotation /// AK103820 // GO:0046872 // metal ion binding // inferred from electronic annotation /// AK122118 // GO:0000166 // nucleotide binding // inferred from electronic annotation /// AK122118 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// AK122118 // GO:0003723 // RNA binding // inferred from electronic annotation /// AK122118 // GO:0046872 // metal ion binding // inferred from electronic annotation /// NM_001048278 // GO:0000166 // nucleotide binding // inferred from electronic annotation /// NM_001048278 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// NM_001048278 // GO:0003723 // RNA binding // inferred from electronic annotation /// NM_001048278 // GO:0046872 // metal ion binding // inferred from electronic annotation --- LOC_Os01g01150.3 // Pfam // IPR000504 // RNA recognition motif domain /// LOC_Os01g01150.3 // Pfam // IPR017868 // Filamin/ABP280 repeat-like /// BGIOSGA002581-TA // Pfam // IPR000504 // RNA recognition motif domain /// BGIOSGA002581-TA // Pfam // IPR017868 // Filamin/ABP280 repeat-like 1 main LOC_Os01g01150.2
15795717 15795717 chr1 + 81428 83302 21 NM_001048279 // Os01g0101700 // Os01g0101700 // --- // 4326463 LOC_Os01g01160.1 // Rice Genome Annotation Project at MSU // cDNA|heat shock protein DnaJ, putative, expressed gene:LOC_Os01g01160 // chr1 // 150 // 150 // 12 // 8 // 0 /// NM_001048279 // RefSeq // Oryza sativa Japonica Group Os01g0101700 (Os01g0101700) mRNA, complete cds. // chr1 // 92 // 92 // 11 // 12 // 0 /// Os01t0101700-00 // Rice Annotation Project Database // Similar to chaperone protein dnaJ 20. // chr1 // 83 // 83 // 5 // 6 // 0 NM_001048279 // Q0JRH0 NM_001048279 // Os.5648 // flower| panicle| stem --- --- LOC_Os01g01160.1 // GO:0031072 // heat shock protein binding // inferred from electronic annotation --- LOC_Os01g01160.1 // Pfam // IPR001623 // DnaJ domain 1 main LOC_Os01g01160.1
15795722 15795722 chr1 + 84337 87844 21 AK103498 // Os01g0101800 // Os01g0101800 // --- // 4326464 BGIOSGA002583-TA // BGI Rice Genome // locus=Chr01:111146:114350:+ gene:BGIOSGA002583 // chr1 // 300 // 300 // 3 // 1 // 0 /// AK103498 // GenBank // Oryza sativa Japonica Group cDNA clone:J033131A17, full insert sequence. // chr1 // 300 // 300 // 3 // 1 // 0 /// Os01t0101800-01 // Rice Annotation Project Database // Conserved hypothetical protein. // chr1 // 100 // 100 // 5 // 5 // 0 BGIOSGA002583-TA // B8ACS0 AK103498 // Os.32622 // callus| panicle BGIOSGA002583-TA // GO:0006260 // DNA replication // inferred from electronic annotation /// BGIOSGA002583-TA // GO:0006270 // DNA replication initiation // inferred from electronic annotation /// BGIOSGA002583-TA // GO:0006275 // regulation of DNA replication // inferred from electronic annotation /// BGIOSGA002583-TA // GO:0006306 // DNA methylation // inferred from electronic annotation /// BGIOSGA002583-TA // GO:0008150 // biological_process // inferred from electronic annotation /// BGIOSGA002583-TA // GO:0008283 // cell proliferation // inferred from electronic annotation /// BGIOSGA002583-TA // GO:0051567 // histone H3-K9 methylation // inferred from electronic annotation /// BGIOSGA002583-TA // GO:0051726 // regulation of cell cycle // inferred from electronic annotation --- BGIOSGA002583-TA // GO:0003674 // molecular_function // inferred from electronic annotation --- --- 1 main BGIOSGA002583-TA
15795731 15795731 chr1 + 133291 134685 22 AK067320 // Os01g0102300 // Os01g0102300 // --- // 4326466 LOC_Os01g01280.1 // Rice Genome Annotation Project at MSU // cDNA|expressed protein gene:LOC_Os01g01280 // chr1 // 143 // 143 // 10 // 7 // 0 /// AK067320 // GenBank // Oryza sativa Japonica Group cDNA clone:J013106P10, full insert sequence. // chr1 // 250 // 250 // 5 // 2 // 0 --- AK067320 // Os.60480 // callus| leaf| panicle| root| stem --- --- --- --- --- 1 main LOC_Os01g01280.1
15795737 15795737 chr1 + 138820 140588 9 NM_001048283 // Os01g0102400 // Os01g0102400 // --- // 4326467 LOC_Os01g01290.1 // Rice Genome Annotation Project at MSU // cDNA|histone-like transcription factor and archaeal histone, putative, expressed gene:LOC_Os01g01290 // chr1 // 100 // 100 // 7 // 7 // 0 /// NM_001048283 // RefSeq // Oryza sativa Japonica Group Os01g0102400 (Os01g0102400) mRNA, complete cds. // chr1 // 43 // 43 // 3 // 7 // 0 NM_001048283 // Q93VF0 NM_001048283 // Os.48026 // flower NM_001048283 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation LOC_Os01g01290.1 // GO:0005622 // intracellular // inferred from electronic annotation /// NM_001048283 // GO:0005622 // intracellular // inferred from electronic annotation /// NM_001048283 // GO:0005634 // nucleus // inferred from electronic annotation /// NM_001048283 // GO:0016602 // CCAAT-binding factor complex // inferred from electronic annotation LOC_Os01g01290.1 // GO:0003677 // DNA binding // inferred from electronic annotation /// LOC_Os01g01290.1 // GO:0043565 // sequence-specific DNA binding // inferred from electronic annotation /// NM_001048283 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// NM_001048283 // GO:0043565 // sequence-specific DNA binding // inferred from electronic annotation /// NM_001048283 // GO:0046982 // protein heterodimerization activity // inferred from electronic annotation --- LOC_Os01g01290.1 // Pfam // IPR003958 // Transcription factor CBF/NF-Y/archaeal histone 1 main LOC_Os01g01290.1
15795740 15795740 chr1 + 140936 143554 21 NM_001048284 // Os01g0102500 // Os01g0102500 // --- // 4326468 LOC_Os01g01295.1 // Rice Genome Annotation Project at MSU // cDNA|expressed protein gene:LOC_Os01g01295 // chr1 // 167 // 167 // 10 // 6 // 0 /// NM_001048284 // RefSeq // Oryza sativa Japonica Group Os01g0102500 (Os01g0102500) mRNA, complete cds. // chr1 // 167 // 167 // 10 // 6 // 0 /// Os01t0102500-01 // Rice Annotation Project Database // Conserved hypothetical protein. // chr1 // 167 // 167 // 10 // 6 // 0 LOC_Os01g01295.1 // B8ACS1 /// LOC_Os01g01295.1 // Q93VY8 /// NM_001048284 // Q93VY8 NM_001048284 // Os.13236 // callus| leaf| panicle| root| stem --- --- --- --- --- 1 main LOC_Os01g01295.1
15795746 15795746 chr1 + 144577 146852 28 AK064812 // Os01g0102600 // Os01g0102600 // --- // 4326439 LOC_Os01g01302.1 // Rice Genome Annotation Project at MSU // cDNA|shikimate kinase, putative, expressed gene:LOC_Os01g01302 // chr1 // 100 // 100 // 3 // 3 // 0 /// AK064812 // GenBank // Oryza sativa Japonica Group cDNA clone:J013000E05, full insert sequence. // chr1 // 120 // 120 // 6 // 5 // 0 /// Os01t0102600-01 // Rice Annotation Project Database // Shikimate kinase domain containing protein. // chr1 // 150 // 150 // 3 // 2 // 0 LOC_Os01g01302.1 // B8ACS2 /// LOC_Os01g01302.1 // Q0JRG4 /// LOC_Os01g01302.1 // Q655K8 /// AK064812 // Q0JRG4 AK064812 // Os.9865 // callus| flower| leaf| panicle| stem LOC_Os01g01302.1 // GO:0000096 // sulfur amino acid metabolic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0006546 // glycine catabolic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0006569 // tryptophan catabolic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0006636 // unsaturated fatty acid biosynthetic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0006733 // oxidoreduction coenzyme metabolic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0006766 // vitamin metabolic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0009072 // aromatic amino acid family metabolic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0009073 // aromatic amino acid family biosynthetic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0009106 // lipoate metabolic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0009108 // coenzyme biosynthetic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0009117 // nucleotide metabolic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0009658 // chloroplast organization // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0009684 // indoleacetic acid biosynthetic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0009695 // jasmonic acid biosynthetic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0009965 // leaf morphogenesis // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0010027 // thylakoid membrane organization // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0015995 // chlorophyll biosynthetic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0016226 // iron-sulfur cluster assembly // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0019288 // isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0019344 // cysteine biosynthetic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0019748 // secondary metabolic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0030154 // cell differentiation // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0044272 // sulfur compound biosynthetic process // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// AK064812 // GO:0000096 // sulfur amino acid metabolic process // inferred from electronic annotation /// AK064812 // GO:0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// AK064812 // GO:0006546 // glycine catabolic process // inferred from electronic annotation /// AK064812 // GO:0006569 // tryptophan catabolic process // inferred from electronic annotation /// AK064812 // GO:0006636 // unsaturated fatty acid biosynthetic process // inferred from electronic annotation /// AK064812 // GO:0006733 // oxidoreduction coenzyme metabolic process // inferred from electronic annotation /// AK064812 // GO:0006766 // vitamin metabolic process // inferred from electronic annotation /// AK064812 // GO:0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// AK064812 // GO:0009072 // aromatic amino acid family metabolic process // inferred from electronic annotation /// AK064812 // GO:0009073 // aromatic amino acid family biosynthetic process // inferred from electronic annotation /// AK064812 // GO:0009106 // lipoate metabolic process // inferred from electronic annotation /// AK064812 // GO:0009108 // coenzyme biosynthetic process // inferred from electronic annotation /// AK064812 // GO:0009117 // nucleotide metabolic process // inferred from electronic annotation /// AK064812 // GO:0009658 // chloroplast organization // inferred from electronic annotation /// AK064812 // GO:0009684 // indoleacetic acid biosynthetic process // inferred from electronic annotation /// AK064812 // GO:0009695 // jasmonic acid biosynthetic process // inferred from electronic annotation /// AK064812 // GO:0009965 // leaf morphogenesis // inferred from electronic annotation /// AK064812 // GO:0010027 // thylakoid membrane organization // inferred from electronic annotation /// AK064812 // GO:0015995 // chlorophyll biosynthetic process // inferred from electronic annotation /// AK064812 // GO:0016226 // iron-sulfur cluster assembly // inferred from electronic annotation /// AK064812 // GO:0019288 // isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway // inferred from electronic annotation /// AK064812 // GO:0019344 // cysteine biosynthetic process // inferred from electronic annotation /// AK064812 // GO:0019748 // secondary metabolic process // inferred from electronic annotation /// AK064812 // GO:0030154 // cell differentiation // inferred from electronic annotation /// AK064812 // GO:0044272 // sulfur compound biosynthetic process // inferred from electronic annotation /// AK064812 // GO:0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation LOC_Os01g01302.1 // GO:0009570 // chloroplast stroma // inferred from electronic annotation /// AK064812 // GO:0009536 // plastid // inferred from reviewed computational analysis /// AK064812 // GO:0009570 // chloroplast stroma // inferred from electronic annotation LOC_Os01g01302.1 // GO:0004765 // shikimate kinase activity // inferred from electronic annotation /// LOC_Os01g01302.1 // GO:0005524 // ATP binding // inferred from electronic annotation /// AK064812 // GO:0004765 // shikimate kinase activity // inferred from electronic annotation /// AK064812 // GO:0005524 // ATP binding // inferred from electronic annotation --- LOC_Os01g01302.1 // Pfam // IPR000623 // Shikimate kinase/Threonine synthase-like 1 1 main LOC_Os01g01302.1
15795758 15795758 chr1 + 147085 149568 18 AK063774 // Os01g0102700 // Os01g0102700 // --- // 4326440 /// AK099081 // Os01g0102700 // Os01g0102700 // --- // 4326440 /// AK099360 // Os01g0102700 // Os01g0102700 // --- // 4326440 /// NM_001048286 // Os01g0102700 // Os01g0102700 // --- // 4326440 LOC_Os01g01307.1 // Rice Genome Annotation Project at MSU // cDNA|translocon-associated protein beta domain containing protein, expressed gene:LOC_Os01g01307 // chr1 // 100 // 100 // 18 // 18 // 0 /// AK063774 // GenBank // Oryza sativa Japonica Group cDNA clone:001-121-C11, full insert sequence. // chr1 // 100 // 100 // 18 // 18 // 0 /// AK099081 // GenBank // Oryza sativa Japonica Group cDNA clone:J023002L13, full insert sequence. // chr1 // 94 // 94 // 17 // 18 // 0 /// AK099360 // GenBank // Oryza sativa Japonica Group cDNA clone:J033046F10, full insert sequence. // chr1 // 94 // 94 // 17 // 18 // 0 /// NM_001048286 // RefSeq // Oryza sativa Japonica Group Os01g0102700 (Os01g0102700) mRNA, complete cds. // chr1 // 100 // 100 // 18 // 18 // 0 LOC_Os01g01307.1 // B7ENG6 /// LOC_Os01g01307.1 // Q655K7 /// LOC_Os01g01307.1 // Q7F2E5 /// AK063774 // B7ENG6 /// AK099081 // B7ENG6 /// AK099360 // B7ENG6 /// NM_001048286 // B7ENG6 /// NM_001048286 // Q0JRG3 AK063774 // Os.10818 // callus| flower| leaf| panicle| root| seed| stem /// AK099081 // Os.10818 // callus| flower| leaf| panicle| root| seed| stem /// AK099360 // Os.10818 // callus| flower| leaf| panicle| root| seed| stem /// NM_001048286 // Os.10818 // callus| flower| leaf| panicle| root| seed| stem --- LOC_Os01g01307.1 // GO:0005886 // plasma membrane // inferred from electronic annotation /// LOC_Os01g01307.1 // GO:0016021 // integral to membrane // inferred from electronic annotation /// LOC_Os01g01307.1 // GO:0005783 // endoplasmic reticulum // inferred from electronic annotation /// AK063774 // GO:0016023 // cytoplasmic membrane-bounded vesicle // inferred from reviewed computational analysis /// AK063774 // GO:0005783 // endoplasmic reticulum // inferred from electronic annotation /// AK063774 // GO:0005886 // plasma membrane // inferred from electronic annotation /// AK063774 // GO:0016021 // integral to membrane // inferred from electronic annotation /// AK099081 // GO:0016023 // cytoplasmic membrane-bounded vesicle // inferred from reviewed computational analysis /// AK099081 // GO:0005783 // endoplasmic reticulum // inferred from electronic annotation /// AK099081 // GO:0005886 // plasma membrane // inferred from electronic annotation /// AK099081 // GO:0016021 // integral to membrane // inferred from electronic annotation /// AK099360 // GO:0016023 // cytoplasmic membrane-bounded vesicle // inferred from reviewed computational analysis /// AK099360 // GO:0005783 // endoplasmic reticulum // inferred from electronic annotation /// AK099360 // GO:0005886 // plasma membrane // inferred from electronic annotation /// AK099360 // GO:0016021 // integral to membrane // inferred from electronic annotation /// NM_001048286 // GO:0016023 // cytoplasmic membrane-bounded vesicle // inferred from reviewed computational analysis /// NM_001048286 // GO:0005783 // endoplasmic reticulum // inferred from electronic annotation /// NM_001048286 // GO:0005886 // plasma membrane // inferred from electronic annotation /// NM_001048286 // GO:0016021 // integral to membrane // inferred from electronic annotation --- --- LOC_Os01g01307.1 // Pfam // IPR008856 // Translocon-associated protein subunit beta 1 main LOC_Os01g01307.1

Total number of rows: 54922

Table truncated, full table size 58203 Kbytes.




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