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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 29, 2016 |
| Title |
Wafergen Biosystems SmartChip Human lncRNA panel |
| Technology type |
RT-PCR |
| Distribution |
virtual |
| Organism |
Homo sapiens |
| Manufacturer |
Wafergen Biosystems |
| Manufacture protocol |
see manufacturer's website
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| Description |
PCR assay
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| |
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| Submission date |
Apr 15, 2016 |
| Last update date |
Apr 15, 2016 |
| Contact name |
Pieter mestdagh |
| E-mail(s) |
pieter.mestdagh@ugent.be
|
| Organization name |
Center for Medical Genetics
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| Street address |
De Pintelaan 185
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| City |
Gent |
| ZIP/Postal code |
9000 |
| Country |
Belgium |
| |
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| Samples (60)
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GSM2124635, GSM2124636, GSM2124637, GSM2124638, GSM2124639, GSM2124640
GSM2124641, GSM2124642, GSM2124643, GSM2124644, GSM2124645, GSM2124646, GSM2124647, GSM2124648, GSM2124649, GSM2124650, GSM2124651, GSM2124652, GSM2124653, GSM2124654, GSM2124655, GSM2124656, GSM2124657, GSM2124658, GSM2124659, GSM2124660, GSM2124661, GSM2124662, GSM2124663, GSM2124664, GSM2124665, GSM2124666, GSM2124667, GSM2124668, GSM2124669, GSM2124670, GSM2124671, GSM2124672, GSM2124673, GSM2124674, GSM2124675, GSM2124676, GSM2124677, GSM2124678, GSM2124679, GSM2124680, GSM2124681, GSM2124682, GSM2124683, GSM2124684, GSM2124685, GSM2124686, GSM2124687, GSM2124688, GSM2124689, GSM2124690, GSM2124691, GSM2124692, GSM2124693, GSM2124694
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| Series (1) |
| GSE80332 |
Long non-coding RNA expression profiling in the NCI60 cancer cell line panel using high-throughput RT-qPCR |
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| Data table header descriptions |
| ID |
|
| MIQE_interval |
MIQE interval |
| SEQUENCE |
MIQE context |
| lncRNA_ID_1 |
lncRNA ID 1 |
| lncRNA_ID_2 |
lncRNA ID 2 |
| source |
source |
| source_version |
source version |
| Data table |
| ID |
MIQE_interval |
SEQUENCE |
lncRNA_ID_1 |
lncRNA_ID_2 |
source |
source_version |
| assay 0001 |
chr1:1399846-1399946 |
AGTCCTTATCGACTCCAGACTTTGGGGATGCGTATTAACGCCAGACTCCTGCAAAGTCTTGCCTTCAACACTCAGCCCCTGGGGAGAGACGGGTGGAGGGA |
ENST00000418833 |
ENSG00000224870 |
ensembl lincRNA |
v63 |
| assay 0002 |
chr1:1401513-1401770 |
TGGGGTTAAGGGACAGTTGTCTGCTAGGTGTTGCTTCCTGGAGATGGCTGAAAAGCCAGTCCAGTCTGCAGGGACCAGGCCACCACCCACCTGATGTGGGAGCATTTCCCCCAATCCCTGCTGGGCTGCTGAATCTGGGGGACATAGGGAAGCTGAGGCTGGTGTTCTGAGTAGTGGCAGAGCTGAGCCACAGGGCATGTCTGAGGTCAGCCCCGAGCAAAATGGAATAGGGACTCAGGGTGGGTCAGGTAACTGGAA |
ENST00000453521 |
ENSG00000239298 |
ensembl lincRNA |
v63 |
| assay 0003 |
chr1:1428542-1428629 |
AGGTCCACAACGTTCATCAGCTCTGGAAATCCCTCAACAATTGTGTCCAGTTTCACCACGAATTCCTTCTCCATATCCTCACCATTTT |
ENST00000366395 |
ENSG00000203586 |
ensembl lincRNA |
v63 |
| assay 0004 |
chr1:1607111-1607335 |
AAAGGAGCTTTCTACACAGCTGGACTTCTGAGGTGGGACCTGCCACGTGCTAACTCTGGCACTCGGAGCGGTCTCTGCCACTGGCAATGTCCTGTCCTGAACATTTCCAGTGTGGCCTCTCTCCTGAAAGGCCTGTGTGCGACTTCTTTGTGAAGCCGGAAGAAAGTTCTGGGACTTCCCCTTCTCCTTTGGTGCAAAGTTACACTAACTGTCATGATGTTGTTG |
ENST00000502203 |
ENSG00000245123 |
ensembl lincRNA |
v63 |
| assay 0005 |
chr1:1886432-1886523 |
GTGCTCTGTCCCTCTCCCAGAGCAGCTGATGTGATGTTGCATTTCTCTCTCTTCATACACACTCACTCCCATATACGTTGGCCCTGCTTTTT |
ENST00000514353 |
ENSG00000248957 |
ensembl lincRNA |
v61 |
| assay 0006 |
chr1:2191100-2191180 |
GGAACCAGCCCCTCCCTCCAGAAGCTTTCTCTAAGGTTGCCAGAAGGTGCTAAGATCTGAACCGAGGTCATCTTGTCCCGG |
ENST00000414104 |
ENSG00000215059 |
ensembl lincRNA |
v61 |
| assay 0007 |
chr1:2556073-2556166 |
ACACAGGCCTGGTGGGTCTATGACTGAAATTGGCCAGACCGCATTCTGGTGGTTTTATTCGGAAGGGAAGTTTACCCTGTTCAGCAGAAGCTGA |
ENST00000416860 |
ENSG00000238164 |
ensembl lincRNA |
v63 |
| assay 0008 |
chr1:3900481-3900575 |
TTTCCCACGCCCGTGGCAGGCCTGAGAGATTATGTTTGCGGGGGGTGCTTTTTTTGTAGCTTCTGTGTTCGCCATATTTGAAAGGGGCAGACGGC |
ENST00000413332 |
ENSG00000236423 |
ensembl lincRNA |
v63 |
| assay 0009 |
chr1:6594159-6594278 |
CTGTGATGTAAGCTGTGAGGCTGGATGTCACGGAGTGTAGGTTTGGAAATGTTAACAGACACACAGGAAAGAAGGCTGTAGGCAATATGATGTGTACCTCAGACTAACACTGCTCACATG |
ENST00000505933 |
ENSG00000250449 |
ensembl lincRNA |
v61 |
| assay 0010 |
chr1:9680843-9681087 |
CAGACTGAACAGCAAGCATTTATGATCCCGTAGTTTCTGTCAATCAGGAATACAGGAGCCGCTTCGTTGGGTGGTTCCGGTCCAGGGTCTCATGAGGCTGCCATTGAGCTTTCAGTGGAGGCTGCAGGTGTCTGGGGCTGGAGGTACCTGCCACAGCGTGGTTGGCAGGCTCAGTGACTGGCTGGCTGTTGGCCAGATATCTCAGTTCCTCTTCATGTGGGCTTCTTCATAGGGTGGCTTGAGTG |
ENST00000415330 |
ENSG00000231789 |
ensembl lincRNA |
v63 |
| assay 0011 |
chr1:15116116-15116269 |
GGACGGATGCATTGCGATTCTGCTTACACATCGGGTTATCAAAGCGAGTCACTTGTTGGAACCATGATGCTCGACCTCCTTCAAGGCCGTTTGCACTGGGGCTTGAGTTTCCAAGATTCACAACAGGTGTCAGCCTCTGAGAACCCTCAAAGCG |
ENST00000310916 |
ENSG00000175147 |
ensembl lincRNA |
v63 |
| assay 0012 |
chr1:15603099-15603197 |
ACAACTATTCAAGACAGAAACCATTTCGGGTAAGCAGACTCCTACAGGGTCCCTACTGCACATTTCTCATCGGTGGTCAAAGCAACAAAACGTGAACTA |
ENST00000428945 |
ENSG00000237301 |
ensembl lincRNA |
v63 |
| assay 0013 |
chr1:15834316-15834432 |
AAGTTTATGGCTCCGATATAAATAATGGGCTATAAACCCGTATCTGGAAAACAGTTGCGCAGTGCGTGCTTAATGGCCAGCCAATGAAAACCAACGTCTCATTCTACTCCGTCTTTC |
ENST00000535249 |
ENSG00000179743 |
ensembl lincRNA |
v63 |
| assay 0014 |
chr1:16620445-16620569 |
GAGTGGGAGAGAGGACTCGAGCCAAGGTGACAAGGAGCAATCTGATTTTTAGCTTAGGGGATGTTCCGACAGCTGTGGAAGAGGGATTGGGGTTGGGATGGAGGAGAGTTAGGACTGGCTGTGAG |
ENST00000501442 |
ENSG00000245549 |
ensembl lincRNA |
v63 |
| assay 0015 |
chr1:17547624-17547713 |
AATAACAGTCTCCCGAAATTGAAGAAAAATATTCCTGAACCTAGACATTACCCACAACCTTTGAATTTCTTTTAAAACAGGCATTTGTTT |
ENST00000509615 |
ENSG00000249753 |
ensembl lincRNA |
v61 |
| assay 0016 |
chr1:19684220-19684376 |
CCTCTTGGGCTCTAGTGATTCTCCCACCTCAGCCTCCTGAGTAGCTGGGATTACACGTGCATGCTACCATGACTGGCTAATTTTTAAATGTTGTAGAGATGGGGTCTCCTATGTTGCCCAGGTCTTGAACTCTTGGCCTCAAGAAATCCTGCTGTCT |
ENST00000512048 |
ENSG00000250744 |
ensembl lincRNA |
v61 |
| assay 0017 |
chr1:23528238-23528330 |
TTCATTCTGCCATTGAACTTGGTTGCCATCCTTGGACAGTGCCTGAGGTCCCTTTAAACAGAAGCTCCACAACAAATCCTGCTCACCCTGCAC |
ENST00000501865 |
ENSG00000247196 |
ensembl lincRNA |
v61 |
| assay 0018 |
chr1:23614785-23614897 |
TTGCCTTTGGATACCACTTCATAGGGTGGCTTGGAGAGTCAGAGTAAGGCGAAGAGTCTGGCCCATATTAAATGCTCAGGACCGGTAGAGATCACCATGCTGGGGACAAGGGG |
ENST00000499591 |
ENSG00000247296 |
ensembl lincRNA |
v63 |
| assay 0019 |
chr1:24210564-24210720 |
GCGGCGACTGAATCCCCGGCATAAGCTGTTGCCTCTAAACGGTCCAGGGGGTCCTTGCAGCCTGGGGGCCAGTTTCTTTGCCCACCCTGCAAAGAGGTACATTCACCATTAACCACAGAAAGAAGGATTTGCGTTCAGTTCAAGGAAGGCTTATAAT |
ENST00000439059 |
ENSG00000230023 |
ensembl lincRNA |
v63 |
| assay 0020 |
chr1:28482315-28482422 |
AACCATAAGATGCCAACCCAATTAACAGTCACACCCATATTTGCATTATATCTGTTTCATATGTTCCGTGTAACTGCCTCCTTTCAAAGTGTTGGTATATTTTTCAAG |
ENST00000496998 |
ENSG00000245460 |
ensembl lincRNA |
v63 |
Total number of rows: 1707
Table truncated, full table size 347 Kbytes.
| Supplementary data files not provided |
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