GEO help: Mouse over screen elements for information.
Status
Public on Jul 06, 2016
Title
Agilent-078298 human ceRNA array V1.0 4X180K [Probe Name Version]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Submission date
Jul 06, 2016
Last update date
Feb 13, 2019
Contact name
qian jin
E-mail(s)
qianjin@shbiochip.com Organization name
MSP
Street address
libing road
City
shanghai
ZIP/Postal code
201203
Country
China
Samples (280)
GSM2548599 , GSM2548600 , GSM2548601 , GSM2548602 , GSM2548603 , GSM2548604
GSM2548605 ,
GSM2747897 ,
GSM2747898 ,
GSM2747899 ,
GSM2747900 ,
GSM2747901 ,
GSM2747902 ,
GSM2946684 ,
GSM2946685 ,
GSM2946686 ,
GSM2946687 ,
GSM2946688 ,
GSM2946689 ,
GSM3100201 ,
GSM3100202 ,
GSM3181375 ,
GSM3181376 ,
GSM3319258 ,
GSM3319259 ,
GSM3319260 ,
GSM3319261 ,
GSM3427391 ,
GSM3427392 ,
GSM3427393 ,
GSM3427394 ,
GSM3427395 ,
GSM3427396 ,
GSM3592512 ,
GSM3592513 ,
GSM3592514 ,
GSM3592515 ,
GSM3592516 ,
GSM3592517 ,
GSM3781295 ,
GSM3781296 ,
GSM3781297 ,
GSM3781298 ,
GSM3781299 ,
GSM3781300 ,
GSM3902724 ,
GSM3902725 ,
GSM3902726 ,
GSM3902727 ,
GSM3902728 ,
GSM3902729 ,
GSM3902730 ,
GSM3902731 ,
GSM4190519 ,
GSM4190520 ,
GSM4190521 ,
GSM4190522 ,
GSM4190523 ,
GSM4190524 ,
GSM4190525 ,
GSM4190526 ,
GSM4251928 ,
GSM4251929 ,
GSM4251930 ,
GSM4251931 ,
GSM4251932 ,
GSM4251933 ,
GSM4251934 ,
GSM4251935 ,
GSM4460550 ,
GSM4460551 ,
GSM4460552 ,
GSM4460553 ,
GSM4460554 ,
GSM4653870 ,
GSM4653871 ,
GSM4653872 ,
GSM4653873 ,
GSM4653874 ,
GSM4653875 ,
GSM4727166 ,
GSM4727167 ,
GSM4727168 ,
GSM4727169 ,
GSM4727170 ,
GSM4727171 ,
GSM4727172 ,
GSM4727173 ,
GSM4727174 ,
GSM4727175 ,
GSM4727176 ,
GSM4727177 ,
GSM4799974 ,
GSM4799975 ,
GSM5031585 ,
GSM5031586 ,
GSM5031587 ,
GSM5031588 ,
GSM5031589 ,
GSM5031590 ,
GSM5031591 ,
GSM5031592 ,
GSM5062016 ,
GSM5062017 ,
GSM5062018 ,
GSM5062019 ,
GSM5062020 ,
GSM5062021 ,
GSM5086567 ,
GSM5086568 ,
GSM5086569 ,
GSM5086570 ,
GSM5086571 ,
GSM5086572 ,
GSM5104698 ,
GSM5104699 ,
GSM5158847 ,
GSM5158848 ,
GSM5158849 ,
GSM5158850 ,
GSM5158851 ,
GSM5158852 ,
GSM5158853 ,
GSM5158854 ,
GSM5207130 ,
GSM5207131 ,
GSM5207132 ,
GSM5207133 ,
GSM5207134 ,
GSM5207135 ,
GSM5207136 ,
GSM5207137 ,
GSM5207138 ,
GSM5207139 ,
GSM5207140 ,
GSM5207141 ,
GSM5207142 ,
GSM5207143 ,
GSM5207144 ,
GSM5207145 ,
GSM5207146 ,
GSM5207147 ,
GSM5207148 ,
GSM5207149 ,
GSM5207150 ,
GSM5207151 ,
GSM5207152 ,
GSM5207153 ,
GSM5207154 ,
GSM5207155 ,
GSM5207156 ,
GSM5207157 ,
GSM5207158 ,
GSM5207159 ,
GSM5207160 ,
GSM5207161 ,
GSM5207162 ,
GSM5207163 ,
GSM5207164 ,
GSM5207165 ,
GSM5207166 ,
GSM5207167 ,
GSM5207168 ,
GSM5207169 ,
GSM5207170 ,
GSM5207171 ,
GSM5207172 ,
GSM5207173 ,
GSM5207174 ,
GSM5207175 ,
GSM5207176 ,
GSM5207177 ,
GSM5207178 ,
GSM5207179 ,
GSM5207180 ,
GSM5207181 ,
GSM5207182 ,
GSM5207183 ,
GSM5207184 ,
GSM5207185 ,
GSM5207186 ,
GSM5207187 ,
GSM5207188 ,
GSM5207189 ,
GSM5207190 ,
GSM5207191 ,
GSM5207192 ,
GSM5207193 ,
GSM5207194 ,
GSM5207195 ,
GSM5207196 ,
GSM5207197 ,
GSM5207198 ,
GSM5207199 ,
GSM5207200 ,
GSM5207201 ,
GSM5207202 ,
GSM5318661 ,
GSM5318662 ,
GSM5318663 ,
GSM5318664 ,
GSM5318665 ,
GSM5318666 ,
GSM5318667 ,
GSM5318668 ,
GSM5318669 ,
GSM5318670 ,
GSM5318671 ,
GSM5318672 ,
GSM5318673 ,
GSM5494696 ,
GSM5494697 ,
GSM5494698 ,
GSM5494699 ,
GSM5494700 ,
GSM5494701 ,
GSM5520313 ,
GSM5520314 ,
GSM5520315 ,
GSM5520316 ,
GSM5520317 ,
GSM5520318 ,
GSM5520319 ,
GSM5520320 ,
GSM5520321 ,
GSM5520322 ,
GSM5520323 ,
GSM5520324 ,
GSM5688598 ,
GSM5688599 ,
GSM5688600 ,
GSM5688601 ,
GSM5688602 ,
GSM5688603 ,
GSM5828443 ,
GSM5828444 ,
GSM5828445 ,
GSM5828446 ,
GSM5828447 ,
GSM5828448 ,
GSM6124005 ,
GSM6124006 ,
GSM6124007 ,
GSM6124008 ,
GSM6124009 ,
GSM7671059 ,
GSM7671060 ,
GSM7671061 ,
GSM7671062 ,
GSM7671063 ,
GSM7671064 ,
GSM7671065 ,
GSM7671066 ,
GSM7671067 ,
GSM7671068 ,
GSM7671069 ,
GSM7671070 ,
GSM7965404 ,
GSM7965405 ,
GSM7965406 ,
GSM7965407 ,
GSM7965408 ,
GSM7965409 ,
GSM7965410 ,
GSM7965411 ,
GSM7965412 ,
GSM7965413 ,
GSM7965414 ,
GSM7965415 ,
GSM7965416 ,
GSM7965417 ,
GSM7965418 ,
GSM7965419 ,
GSM7965420 ,
GSM8182931 ,
GSM8182932 ,
GSM8182933 ,
GSM8182934 ,
GSM8182935 ,
GSM8182936 Series (36)
GSE96984 Different expression profiles of lncRNAs, mRNAs and circRNAs in preeclampsia and normal placenta (ceRNA)
GSE96985 Different expression profiles of lncRNAs, mRNAs and circRNAs in preeclampsia and normal placenta None
GSE102897 Competing endogenous RNA expression dataset from placenta tissues of normal human and patients with severe preeclampsia.
GSE109569 glioblastoma(GBM) tissues: Tumor tissues(C) vs. Normal tissues(N)
GSE113202 Identification of rapamycin as an autophagy inducer to treat PANC-1 cells [mRNA, circRNA, lncRNA]
GSE113203 Identification of rapamycin as an autophagy inducer to treat PANC-1 cells
GSE115516 Identification of chloroquine diphosphate as an autophagy inhibitor to treat PANC-1 cells [mRNA, circRNA, lncRNA]
GSE115517 Identification of chloroquine diphosphate as an autophagy inhibitor to treat PANC-1 cells
GSE118139 Gene expression signatures for human non-diabetic (hND) islets and human type 2 diabetes mellitus (hT2DM) islets
GSE121178 Analysis of long noncoding RNA expression profile in the whole blood of neonatal Hypoxic Ischemic Encephalopathy
GSE126170 Long non-coding RNA RP11-820 promotes extracellular matrix production via regulating miR-3178/MYOD1 in human trabecular meshwork cells
GSE131481 CeRNA Expression Profiling Identifies KIT Related circRNAs-miRNA-mRNA Networks in Gastro-intestinal Stromal Tumors
GSE133225 Differenatiation of ceRNA (circRNA, lncRNA and mRNA) expression in PBMCs (peripheral blood mononuclear cells)
GSE140927 Identification of specific ceRNA signatures in prostate cancer (PCa)
GSE143192 Differentially expressed profile of LncRNA in PBMCs (peripheral blood mononuclear cells) of asthma patients
GSE148334 Development of lncRNAs expression signatures in exosomes derived from different gastric cancer cells
GSE153761 Different expression profiles of lncRNAs, mRNAs and circRNAs in degenerative and healthy cervical cartilage endplate (ceRNA)
GSE156229 Identification of specific lncRNA signatures in breast cancer (BC)
GSE158423 Different expression profiles of lncRNA, mRNA and circRNA in peripheral blood (ceRNA) of normal newborns and children with BPD.
GSE165324 RNA microarray analysis of Human Umbilical Vein Endothelial Cells in normal pregnancy and preeclampsia
GSE166126 Expression profiles of RNA from monocyte-derived small extracellular vesicles in coronary atherosclerosis
GSE166846 Exosomal RNA expression profiles in umbilical cord blood from preeclampsia patients
GSE167396 Analysis of differentially expressed lncRNA, circRNA and mRNA between FaDu and cisplatin-resistant FaDu cell
GSE167399 Analysis of differentially expressed miRNA, lncRNA, circRNA and mRNA between FaDu and cisplatin-resistant FaDu cell
GSE168694 Differentiated expression of ceRNA (circRNA, lncRNA, and mRNA) in PBMCs (peripheral blood mononuclear cells) of healthy controls and AD (atopic dermatitis) patients
GSE169498 Screening and Identification of Key Microenvironment-Related Genes in Non-Functioning Pituitary Adenoma
GSE174510 Agilent SBC-ceRNA microarray chips were employed to detect the 3 normal plasma cells (NPCs), 5 lgD MM samples and 5 lgG MM samples respectively.
GSE181318 Development of gene expression signatures for psoriasis
GSE182193 Development depression-associated ncRNA biomarkers research
GSE182195 Development depression-associated biomarkers research
GSE188700 Integrated Profiling and Immunohistochemistry Analyses Link circ-BRIP1, circ-EPHB4 and Their Host Genes with Imatinib Resistance in Gastrointestinal Stromal Tumors
GSE194119 Exosomal RNA expression profiles and their prediction performance in gestational diabetes mellitus patients with macrosomia
GSE202538 Development of circRNAs expression signatures in exosomes derived from different gastric cancer cells
GSE239758 The mRNA-lncRNA-circRNA network profiling of Turner syndrome patient-derived induced pluripotent stem cells and their derived cardiomyocytes
GSE249824 ceRNA-microarray reveals abnormal RNA of tuberculosis in PBMC
GSE263003 Comprehensive analysis of circular RNA profiling in AZD9291-resistant non-small cell lung cancer cell lines
Relations Alternative to
GPL26192 (Feature number version)
Data table header descriptions ID Agilent probe name
CONTROL_TYPE Control type
TYPE Probe type
ACCESSION Accession
SOURCE RNA/circRNA/ceRNA/lncRNA database
CHR Chromosomal Location
STRAND Chromosomal Strand
START Chromosomal Start
END Chromosomal End
GENE_SYMBOL Gene_Symbol
GENE_DESCRIPTION Gene Description
ENTREZGENEID EntrezgeneID
GO_ID GO ID
RELATION Relationship
ASSOCIATED_GENE Associated Gene
ASSOCIATED_GENE_DESCRIPTION Associated Gene Description
ASSOCIATED_GENE_STRAND Associated Gene Strand
CIRCRNA_ID circRNA Name
CHROM circRNA Chromosomal Location
HSA_HG19_CIRCRNA_START circRNA Chromosomal Start
HSA_HG19_CIRCRNA_END circRNA Chromosomal End
HSA_HG19_CIRCRNA_STRAND circRNA Chromosomal Strand
GENOMIC_LENGTH Genomic Length
SPLICED_SEQ_LENGTH Spliced Sequence Length
SAMPLES REPEATS ANNOTATION BEST_TRANSCRIPT Associated Best Transcript Accession
GB_ACC GenBank Accession number
GENE_SYMBOL circRNA Associated Gene Symbol
CIRCRNA_STUDY SEQUENCE Sequence
SPOT_ID Control
Data table ID CONTROL_TYPE TYPE ACCESSION SOURCE CHR STRAND START END GENE_SYMBOL GENE_DESCRIPTION ENTREZGENEID GO_ID RELATION ASSOCIATED_GENE ASSOCIATED_GENE_DESCRIPTION ASSOCIATED_GENE_STRAND CIRCRNA_ID CHROM HSA_HG19_CIRCRNA_START HSA_HG19_CIRCRNA_END HSA_HG19_CIRCRNA_STRAND GENOMIC_LENGTH SPLICED_SEQ_LENGTH SAMPLES REPEATS ANNOTATION BEST_TRANSCRIPT GB_ACC GENE_SYMBOL CIRCRNA_STUDY SEQUENCE SPOT_ID GE_BrightCorner
pos
CONTROL
DarkCorner
pos
CONTROL
hsa_circ_0037705
FALSE
circRNA
hsa_circ_0037705
chr16
4404542
4463405
-
58863
3334
H1hesc
ANNOTATED, CDS, coding, OVCODE, OVERLAPTX, OVEXON, UTR3
NM_024535
NM_024535 CORO7
Salzman2013
TTTCAGCAATTAAACTTTTTTAAGCTGGCCATCCTGGATCAGTGACATTCGAGCAGGAAC
LNCV6_95686_PI430048170
FALSE
mRNA
NM_139173
RefSeq
chr4
-
102900927
103019739
SLC9B1
solute carrier family 9%2C subfamily B (NHA1%2C cation proton antiporter 1)%2C member 1%2C transcript variant 1
150159
GO:0034220|GO:0005886|GO:0015299|GO:0016021|GO:0055085
.
.
-
.
ATGCTTACACGCCATTATGATCCAAGCAAAATAAAACTGCAGTTGTCAACATTAGAACAT
LNCV6_43759_PI430048170
FALSE
lncRNA
lnc-FAM5C-14:1
lncipedia
chr1
-
189035960
189036444
-
-
intergenic
.
-
.
GAATAAACATATTTGAGAAGCCTTACTGAGGAAAAGGCCATGTGAAACCCTGACACAGAC
LNCV6_97178_PI430048170
FALSE
lncRNA
lnc-NOP14-5:1
lncipedia
chr4
-
3060246
3060539
-
-
intergenic
.
-
.
GACTCATGATTCAGGAAAAACCCAAGAAAAGTGTGAGGAAAGATTGAAGAGACACCAACC
hsa_circ_0004246
FALSE
circRNA
hsa_circ_0004246
chr8
145745084
145746908
+
1824
1553
Hs68_RNase, Hs68_control
None
ALT_ACCEPTOR, ALT_DONOR, CDS, coding, INTERNAL, OVCODE, OVEXON, UTR3, UTR5
NM_014665
NM_014665 LRRC14
Jeck2013
GTCTCTTTAGGTGGCCGTCTGCCCGGCCCAGCACCATGCACACGCTTGTGTTCTTGAGCA
hsa_circ_0049281
FALSE
circRNA
hsa_circ_0049281
chr19
10687873
10694746
-
6873
1005
Nhek
ANNOTATED, CDS, coding, INTERNAL, OVCODE, OVEXON
NM_005498
NM_005498 AP1M2
Salzman2013
AGAAACGTCGTGATTTGGAGTATTAAGTCTTTCCCGCCATTGATCAGCCGCAACTACAAG
hsa_circ_0043837
FALSE
circRNA
hsa_circ_0043837
chr17
40650941
40653322
+
2381
444
Nhek, K562, Hepg2, Helas3, Gm12878, Bj, Ag04450, A549, Sknshra, Mcf7
ANNOTATED, CDS, coding, INTERNAL, OVCODE, OVEXON
NM_001130020
NM_001130020 ATP6V0A1
Salzman2013
GAAAGCATTTGATTTGGAACATTGCTACCAATAAACTGACGTTCTTGAACTCCTTTAAGA
hsa_circ_0038993
FALSE
circRNA
hsa_circ_0038993
chr16
30087349
30087796
+
447
227
H1hesc
Simple_repeat
ALT_ACCEPTOR, CDS, coding, OVCODE, OVEXON, upstream_start, UTR5
NM_002720
NM_002720 PPP4C
Salzman2013
AGAGCGAAGTCAAGGCCCTGTGCGCTAAGGCCAGCGGTCGAAAGCGGAGTGAAAGAGGGA
LNCV6_144096_PI430048170
FALSE
mRNA
NM_144636
RefSeq
chr3
-
14112076
14124871
CHCHD4
coiled-coil-helix-coiled-coil-helix domain containing 4%2C transcript variant 2
131474
GO:0005739|GO:0005758|GO:0006626|GO:0015035|GO:0051084|GO:0044267|GO:0055114|GO:0045041|GO:0022417
.
.
-
.
GACCTAATTATTACCAGAGTAGCAGCAAGAGAGGAAACGTTGTGAATTAAGTATTCAATT
LNCV6_77126_PI430048170
FALSE
lncRNA
lnc-MICB-4:1
lncipedia
chr6
+
31515978
31516211
-
-
exonic_sense
RT1-O1
-
+
ACTCAAGACTCAAGGGGACCAGACCCAGGAAGATGAGACATATCAGGGCTGGGCAGCTGT
hsa_circ_0026263
FALSE
circRNA
hsa_circ_0026263
chr12
51080355
51135322
+
54967
3037
H1hesc
ANNOTATED, CDS, coding, INTERNAL, OVCODE, OVEXON
NM_173602
NM_173602 DIP2B
Salzman2013
ATTGCTGAATGGTTGGCCCCGGCTCAAATGGGTTGTAACAGATTCCAAGTACCTTTCAAA
hsa_circ_0013998
FALSE
circRNA
hsa_circ_0013998
chr1
150195511
150204264
-
8753
682
Gm12878
Low_complexity
ANNOTATED, CDS, coding, INTERNAL, OVCODE, OVERLAPTX, OVEXON
NM_030920
NM_030920 ANP32E
Salzman2013
GAAGAAGAGGGTGACAGAGTTAGTCCTTGATAATTGCCTGTGTGTCAATGGGGAAATTGA
hsa_circ_0040884
FALSE
circRNA
hsa_circ_0040884
chr16
88870185
88875666
+
5481
2675
Helas3, A549
LTR
ANNOTATED, CDS, coding, OVCODE, OVERLAPTX, OVEXON, UTR3, UTR5
NM_030928
NM_030928 CDT1
Salzman2013
TATTTCTGACCTCCTAAACTCTAATAAAGTCATGCTTACAGCCACTACCCGCCTCTTCCT
hsa_circ_0005029
FALSE
circRNA
hsa_circ_0005029
chr2
26587169
26596497
+
9328
516
Hs68_RNase, Hs68_control, K562, Huvec, Hsmm, Hepg2, Helas3, H1hesc, Gm12878, Bj, A549, Sknshra
None
ANNOTATED, CDS, coding, INTERNAL, OVCODE, OVEXON
NM_033505
NM_033505 EPT1
Jeck2013, Salzman2013
TAGCCAGGTGTACAGTGCTGTGGATACCAATCCACTTTCTCTGTATGTCATGCATCCATT
LNCV6_117757_PI430048170
FALSE
lncRNA
lnc-ZNF585B-1:1
lncipedia
chr19
-
37235601
37236074
-
-
exonic_antisense
ZNF383
zinc finger protein 383
+
AAACCAGATTGCCGTAGTTCTCCAACATCACATCTCTGTATAAGTCCCTCTGAACAGGGT
LNCV6_57164_PI430048170
FALSE
lncRNA
lnc-DCHS1-1:2
lncipedia
chr11
-
6617010
6619409
-
-
exonic_sense
tpp1
tripeptidyl peptidase I
-
GGACGAAAATACCTGACCCTAGAGAATGTGGCTGATCTGGTGAGGCCATCCCCACTGACC
LNCV6_15411_PI430048170
FALSE
lncRNA
ENST00000497285
ENSEMBL_GENCODE
chr3
-
161816909
161821908
RP11-774I5.1
-
intergenic
.
-
.
TTTAGAATCACCCACTCAAGTTGACACCAATTCTGAATGGTGAGGTCTCACCCTTCTTAT
LNCV6_22235_PI430048170
FALSE
lncRNA
ENST00000616473
ENSEMBL_GENCODE
chr9
+
120845466
120851490
PSMD5-AS1
-
intergenic
.
-
.
AGTTCTGTAATCTTTCAGGTTGCTGTGATCAGTCCCCAAGGAGTCTACACTCTCAAAGAG
176082 43727 Kbytes .Supplementary file Size Download File type/resource GPL22120_078298_D_GEO_20150917_ceRNA.txt.gz
12.3 Mb
(ftp) (http) TXT
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