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Platform GPL22678 Query DataSets for GPL22678
Status Public on Nov 15, 2016
Title HumanOmniExpress-24 v1.1 BeadChip [SNP_ID version]
Technology type oligonucleotide beads
Distribution commercial
Organism Homo sapiens
Manufacturer Illumina, Inc.
Manufacture protocol See manufacturer's website
 
 
Submission date Nov 15, 2016
Last update date Nov 15, 2016
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (322) GSM2392427, GSM2392428, GSM2392429, GSM2392430, GSM2392431, GSM2450400 
Series (17)
GSE89878 Gene expression data from induced Pluripotent Stem cells from Parkinson's Disease patients harbouring amplification of, or mutations in the SNCA gene, and from healthy control donors [genotype]
GSE89886 Gene expression data from induced Pluripotent Stem cells from Parkinson's Disease patients harbouring amplification of, or mutations in the SNCA gene, and from healthy control donors
GSE93285 Human induced pluripotent stem cell-derived macrophages share ontogeny with MYB-independent tissue-resident macrophages

Data table header descriptions
ID SNP_ID
IlmnID
SNP_ID NCBI SNP accession
IlmnStrand
SNP
AddressA_ID
AlleleA_ProbeSeq
AddressB_ID
AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
Ploidy
Species
Source
SourceVersion
SourceStrand
SourceSeq
TopGenomicSeq
BeadSetID
Exp_Clusters
RefStrand

Data table
ID IlmnID SNP_ID IlmnStrand SNP AddressA_ID AlleleA_ProbeSeq AddressB_ID AlleleB_ProbeSeq GenomeBuild Chr MapInfo Ploidy Species Source SourceVersion SourceStrand SourceSeq TopGenomicSeq BeadSetID Exp_Clusters RefStrand
rs1000000 rs1000000-138_B_F_2258025656 rs1000000 BOT [T/C] 95775890 GACTTGGAAATTCCTGGAGGTCTTTTTCCATCCTCTCCTGCCTTCTTTAG 37 12 126890980 diploid Homo sapiens dbSNP 138 BOT TCCCAGGGTTGACTTGGAAATTCCTGGAGGTCTTTTTCCATCCTCTCCTGCCTTCTTTAG[T/C]TTATTTAAGGCTTAGTCGTTCATGGTCCCTAGGTGGCTGCCTCTGATTCAGGCACCATCA TGATGGTGCCTGAATCAGAGGCAGCCACCTAGGGACCATGAACGACTAAGCCTTAAATAA[A/G]CTAAAGAAGGCAGGAGAGGATGGAAAAAGACCTCCAGGAATTTCCAAGTCAACCCTGGGA 759 3 -
rs1000002 rs1000002-138_T_F_2258025657 rs1000002 TOP [A/G] 20798118 ACCCGCTCAGGTGGACTCAGCTTAGGAGGACTAAGCTGGCTGCTGTCCAA 37 3 183635768 diploid Homo sapiens dbSNP 138 TOP ACTCCCTTCTACCCGCTCAGGTGGACTCAGCTTAGGAGGACTAAGCTGGCTGCTGTCCAA[A/G]TGAGAACCATCAGAGCTAGTACTTGGTCTCCCGCAGACCTGGCACAGCCCTGTTCTCAAA ACTCCCTTCTACCCGCTCAGGTGGACTCAGCTTAGGAGGACTAAGCTGGCTGCTGTCCAA[A/G]TGAGAACCATCAGAGCTAGTACTTGGTCTCCCGCAGACCTGGCACAGCCCTGTTCTCAAA 783 3 -
rs10000023 rs10000023-138_B_F_2258025904 rs10000023 BOT [T/G] 84656366 GAGCACGGAATGGACAGGAGAGAGAGTTCACAGGTGGAATTGCTAGAATT 37 4 95733906 diploid Homo sapiens dbSNP 138 BOT CTGGGAGGGGGAGCACGGAATGGACAGGAGAGAGAGTTCACAGGTGGAATTGCTAGAATT[T/G]GGGGGTTAGTTGGTTTTTGAAAGTGATTTTTTTGGTTTGTCATTAGAAATTGAAAGGATA TATCCTTTCAATTTCTAATGACAAACCAAAAAAATCACTTTCAAAAACCAACTAACCCCC[A/C]AATTCTAGCAATTCCACCTGTGAACTCTCTCTCCTGTCCATTCCGTGCTCCCCCTCCCAG 708 3 +
rs1000003 rs1000003-138_B_R_2258025659 rs1000003 BOT [T/C] 81751144 TGAATTTAATGCCTTAGTCCCAAGAAGAGAGAGGTGCTTTGAGTCAGTGC 37 3 98342907 diploid Homo sapiens dbSNP 138 TOP atcagaatctgcattttaacaacagccccaggtgattcatatgcaagttactctttgaga[A/G]gcactgACTCAAAGCACCTCTCTCTTCTTGGGACTAAGGCATTAAATTCAACTGGGACAA atcagaatctgcattttaacaacagccccaggtgattcatatgcaagttactctttgaga[A/G]gcactgACTCAAAGCACCTCTCTCTTCTTGGGACTAAGGCATTAAATTCAACTGGGACAA 927 3 -
rs10000030 rs10000030-138_B_R_2258025660 rs10000030 BOT [T/C] 5663205 CTTTTTCCAAGCTATACAGATTCATAGATATTGGTATCTTTTCTTAAGCC 37 4 103374154 diploid Homo sapiens dbSNP 138 TOP TTGATATGACTGTTTCATGAGATTCTATCTGGCTCAATATGATGCAGGTTTAACTACAGC[A/G]GGCTTAAGAAAAGATACCAATATCTATGAATCTGTATAGCTTGGAAAAAGGAGAAAATGC TTGATATGACTGTTTCATGAGATTCTATCTGGCTCAATATGATGCAGGTTTAACTACAGC[A/G]GGCTTAAGAAAAGATACCAATATCTATGAATCTGTATAGCTTGGAAAAAGGAGAAAATGC 971 3 -
rs10000037 rs10000037-138_B_R_2258025661 rs10000037 BOT [T/C] 67793954 AAATAGGTCAGCACGACTGTCATCTTTTCTTCTCGTTAATAACGTTTACA 37 4 38924330 diploid Homo sapiens dbSNP 138 TOP cccagCGATACCTCCCACACCATGAATCACTTTTGTCCTGGGAAAACTGGGGACCGCTGT[A/G]TGTAAACGTTATTAACGAGAAGAAAAGATGACAGTCGTGCTGACCTATTTCTTTTTTCAG cccagCGATACCTCCCACACCATGAATCACTTTTGTCCTGGGAAAACTGGGGACCGCTGT[A/G]TGTAAACGTTATTAACGAGAAGAAAAGATGACAGTCGTGCTGACCTATTTCTTTTTTCAG 759 3 -
rs10000041 rs10000041-138_T_R_2258025662 rs10000041 TOP [A/C] 42786284 CGGGATTGCAGCTGGGAACAGGTGAACAGCAACTGGTGCAATGGGGGTGC 37 4 165621955 diploid Homo sapiens dbSNP 138 BOT CCCTGCCCCAGCGCATCCCATGCACTCTGAAGGCCCTCTTGTCCTGCAGCCACGTAGCAC[T/G]GCACCCCCATTGCACCAGTTGCTGTTCACCTGTTCCCAGCTGCAATCCCGAGGGTTGCCT AGGCAACCCTCGGGATTGCAGCTGGGAACAGGTGAACAGCAACTGGTGCAATGGGGGTGC[A/C]GTGCTACGTGGCTGCAGGACAAGAGGGCCTTCAGAGTGCATGGGATGCGCTGGGGCAGGG 772 3 -
rs10000042 rs10000042-138_T_R_2258079473 rs10000042 TOP [A/G] 65660910 TTGCCACATATTAAGACATTTCATCTTCACCAAAGCAGTAGGAGTGGCAC 37 4 5237152 diploid Homo sapiens dbSNP 138 BOT ggtaagttactcagccacactgtcctccatttcctcatgttggaaagagaatgacaatgg[T/C]gtgccactcctactgctttggtgaagatgaaatgtcttaatatgtggcaagcacttagac gtctaagtgcttgccacatattaagacatttcatcttcaccaaagcagtaggagtggcac[A/G]ccattgtcattctctttccaacatgaggaaatggaggacagtgtggctgagtaacttacc 708 3 -
rs10000049 rs10000049-138_T_F_2258025665 rs10000049 TOP [A/C] 88629420 TTTGCATTTCATCTCTCTCTCTCTGCTTGCTGTGCTTGATGTAGCCCCAA 37 4 118948220 diploid Homo sapiens dbSNP 138 TOP AATTGATGACTTTGCATTTCATCTCTCTCTCTCTGCTTGCTGTGCTTGATGTAGCCCCAA[A/C]CAAAAAAAAAAAAAAAAAACTGTTGCCCCCCTAGCATAGATAGGTATAAATAAAAAATAA AATTGATGACTTTGCATTTCATCTCTCTCTCTCTGCTTGCTGTGCTTGATGTAGCCCCAA[A/C]CAAAAAAAAAAAAAAAAAACTGTTGCCCCCCTAGCATAGATAGGTATAAATAAAAAATAA 759 3 +
rs1000007 rs1000007-138_T_F_2258025666 rs1000007 TOP [A/G] 12790596 CTGTCTGTAAGATGAAAACCTGGCCCCATGTCTGTCAAAAAATTTGGAAA 37 2 237752054 diploid Homo sapiens dbSNP 138 TOP GGGAGAATTCCTGTCTGTAAGATGAAAACCTGGCCCCATGTCTGTCAAAAAATTTGGAAA[A/G]CTTCAGCTCTTAAGGAGGATATTGGGAATTGTGGACCACGCAGACACCTCAAACTCAGCT GGGAGAATTCCTGTCTGTAAGATGAAAACCTGGCCCCATGTCTGTCAAAAAATTTGGAAA[A/G]CTTCAGCTCTTAAGGAGGATATTGGGAATTGTGGACCACGCAGACACCTCAAACTCAGCT 927 3 -
rs10000073 rs10000073-138_T_R_2258079485 rs10000073 TOP [A/G] 61627247 CAGTTCTTCCCTTTGGAGCTGAGTAAATGTACAACTAGGATGCCAAAGAG 37 4 43022222 diploid Homo sapiens dbSNP 138 BOT TTACCTGAGGTAAGACTTACTAGATGGAAGAGTATGTGGCAGTAAGGAAAAATGTCTTCT[T/C]CTCTTTGGCATCCTAGTTGTACATTTACTCAGCTCCAAAGGGAAGAACTGTGCTCAGTAT ATACTGAGCACAGTTCTTCCCTTTGGAGCTGAGTAAATGTACAACTAGGATGCCAAAGAG[A/G]AGAAGACATTTTTCCTTACTGCCACATACTCTTCCATCTAGTAAGTCTTACCTCAGGTAA 927 3 -
rs10000081 rs10000081-138_B_F_2258025669 rs10000081 BOT [T/C] 39701599 TTGTCCACTTTGGTCTTTCTCAGTTGTTTCTGACAGTCACTTAGATGGAC 37 4 17348363 diploid Homo sapiens dbSNP 138 BOT TATCTTTTCTTTGTCCACTTTGGTCTTTCTCAGTTGTTTCTGACAGTCACTTAGATGGAC[T/C]CCTTATGCCCTCTGCTACACTCTGCACACTCCTGAGGTACATGAAGGCACAGAGATCTAT ATAGATCTCTGTGCCTTCATGTACCTCAGGAGTGTGCAGAGTGTAGCAGAGGGCATAAGG[A/G]GTCCATCTAAGTGACTGTCAGAAACAACTGAGAAAGACCAAAGTGGACAAAGAAAAGATA 708 3 +
rs10000092 rs10000092-138_T_R_2258025909 rs10000092 TOP [A/G] 40661927 CAAGGTTATGCATAATGCTAATTAGGATCCTAAAGCAGGAAGTAAGGGAA 37 4 21895517 diploid Homo sapiens dbSNP 138 BOT AGTTTTGTAGTGGATTACATCTGAACTGAATTTTCAGTGCTGCTGTGTGCATATTAAATG[T/C]TTCCCTTACTTCCTGCTTTAGGATCCTAATTAGCATTATGCATAACCTTGAAAATAATCT AGATTATTTTCAAGGTTATGCATAATGCTAATTAGGATCCTAAAGCAGGAAGTAAGGGAA[A/G]CATTTAATATGCACACAGCAGCACTGAAAATTCAGTTCAGATGTAATCCACTACAAAACT 927 3 -
rs10000105 rs10000105-138_T_F_2258079378 rs10000105 TOP [A/G] 50660895 TGAGACACACATTGTGATTGTGCTTGTTTTTGAAAGACAGAGTCCAGGTC 37 4 53623677 diploid Homo sapiens dbSNP 138 TOP AGCAATTGGGTGAGACACACATTGTGATTGTGCTTGTTTTTGAAAGACAGAGTCCAGGTC[A/G]GAATCACAGGGAAGGAAATCAACTACTTCAAAATATTGAACTGGTTAGTGGGAAGCGCTC AGCAATTGGGTGAGACACACATTGTGATTGTGCTTGTTTTTGAAAGACAGAGTCCAGGTC[A/G]GAATCACAGGGAAGGAAATCAACTACTTCAAAATATTGAACTGGTTAGTGGGAAGCGCTC 783 3 +
rs10000119 rs10000119-138_T_R_2258025673 rs10000119 TOP [A/G] 61633103 GAAAATACATGTTTAATAGCTGTATGAACCAAAATGTGAGCGCCATCACC 37 4 37796830 diploid Homo sapiens dbSNP 138 BOT AGAATTCTGTGTATCTGCTCTCTTCCACTTAGTGGAAGTGGTACTTGGTCAAATACATGT[T/C]GGTGATGGCGCTCACATTTTGGTTCATACAGCTATTAAACATGTATTTTCTCTCCAACTA TAGTTGGAGAGAAAATACATGTTTAATAGCTGTATGAACCAAAATGTGAGCGCCATCACC[A/G]ACATGTATTTGACCAAGTACCACTTCCACTAAGTGGAAGAGAGCAGATACACAGAATTCT 759 3 -
rs10000124 rs10000124-138_B_R_2258025911 rs10000124 BOT [T/G] 62770967 CCAAGGAGATCCGGAAAGAACCAGAAGCTGATGGCATCCTGGAAGTAAGG 37 4 109106451 diploid Homo sapiens dbSNP 138 TOP ttatttgacccatcatcagcatttgacacagttgattacactttcttcaaacgctttctt[A/C]ccttacttccaggatgccatcagcttctggttctttccggatctccttggctcttcgtta ttatttgacccatcatcagcatttgacacagttgattacactttcttcaaacgctttctt[A/C]ccttacttccaggatgccatcagcttctggttctttccggatctccttggctcttcgtta 708 3 -
rs10000154 rs10000154-138_T_F_2258025676 rs10000154 TOP [A/G] 75725318 TGGGGAAATGTACAAGCTTGGGTATCAGGAAGACTTAGGTTTGAATTCTA 37 4 80666077 diploid Homo sapiens dbSNP 138 TOP TAAGGTATAATGGGGAAATGTACAAGCTTGGGTATCAGGAAGACTTAGGTTTGAATTCTA[A/G]CTCTGCATTGACTCAGTTACATCATTTAGAAAATAAAGAAATGTTTCCTTCTTTTCACAG TAAGGTATAATGGGGAAATGTACAAGCTTGGGTATCAGGAAGACTTAGGTTTGAATTCTA[A/G]CTCTGCATTGACTCAGTTACATCATTTAGAAAATAAAGAAATGTTTCCTTCTTTTCACAG 708 3 +
rs1000016 rs1000016-138_B_R_2258025677 rs1000016 BOT [T/C] 72757823 GGACAGGGATACAGGGAGTAGGGGCTTTGAGAAAAGTGTAACTTATTTGC 37 2 235690982 diploid Homo sapiens dbSNP 138 TOP TGTCCTCCCCTCCGTAAGCATTCTTCCTCCCTTTCTTACTCAGCCTGAATCCTGCTATTT[A/G]GCAAATAAGTTACACTTTTCTCAAAGCCCCTACTCCCTGTATCCCTGTCCTGCTATATTC TGTCCTCCCCTCCGTAAGCATTCTTCCTCCCTTTCTTACTCAGCCTGAATCCTGCTATTT[A/G]GCAAATAAGTTACACTTTTCTCAAAGCCCCTACTCCCTGTATCCCTGTCCTGCTATATTC 927 3 -
rs10000160 rs10000160-138_T_F_2258025678 rs10000160 TOP [A/G] 81609198 GGATGTTGTCACTGCTGTTTTGTGATCTAGCCTCCTCATAGCTGCTAGAG 37 4 69033099 diploid Homo sapiens dbSNP 138 TOP CTGCCACTGTGGATGTTGTCACTGCTGTTTtgtgatctagcctcctcatagctgctagag[A/G]gccaggtggtacaacctaaaactgtgtcacagtcgatgtgtcatgggaggaatttttttc CTGCCACTGTGGATGTTGTCACTGCTGTTTtgtgatctagcctcctcatagctgctagag[A/G]gccaggtggtacaacctaaaactgtgtcacagtcgatgtgtcatgggaggaatttttttc 759 3 +
rs10000169 rs10000169-138_T_R_2258025679 rs10000169 TOP [A/G] 53670281 CACCACAAAGACCTGACAATTCAAACAGTCTTACAGTTAATAACACGTAG 37 4 77356246 diploid Homo sapiens dbSNP 138 BOT TATTCTAGGAACTATTTTCTATCCCTTGGCAATTAGCCATCTGTATAGTATTTTTAACTT[T/C]CTACGTGTTATTAACTGTAAGACTGTTTGAATTGTCAGGTCTTTGTGGTGAGCTGAATTC GAATTCAGCTCACCACAAAGACCTGACAATTCAAACAGTCTTACAGTTAATAACACGTAG[A/G]AAGTTAAAAATACTATACAGATGGCTAATTGCCAAGGGATAGAAAATAGTTCCTAGAATA 708 3 -

Total number of rows: 713014

Table truncated, full table size 300130 Kbytes.




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Supplementary data files not provided
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