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Status
Public on Jun 09, 2020
Title
Agilent-085763 Pfalciparum15KArray_Sept18
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Plasmodium falciparum Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Based on designs 037237 (Llinas lab) and 084561 (Cortes lab), with some new probes added by Cortes lab.
Submission date
Jul 29, 2019
Last update date
Jul 29, 2019
Contact name
Oriol Llorà-Batlle
E-mail(s)
oriol.llora@isglobal.org Phone
+34932275400-4080
Organization name
ISGlobal
Street address
Carrer Rosselló 153, 1st floor
City
Barcelona
ZIP/Postal code
08036
Country
Spain
Samples (84)
GSM3983488 , GSM3983489 , GSM3983490 , GSM3983491 , GSM3983492 , GSM3983493
GSM3983494 ,
GSM3983495 ,
GSM3983496 ,
GSM3983497 ,
GSM3983498 ,
GSM3983499 ,
GSM5067033 ,
GSM5067034 ,
GSM5067035 ,
GSM5067036 ,
GSM5067037 ,
GSM5067038 ,
GSM5067039 ,
GSM5067040 ,
GSM5067041 ,
GSM5067042 ,
GSM5067043 ,
GSM5067044 ,
GSM5067045 ,
GSM5067046 ,
GSM5067047 ,
GSM5067048 ,
GSM5067049 ,
GSM5067050 ,
GSM5067051 ,
GSM5067052 ,
GSM5067053 ,
GSM5067054 ,
GSM5067055 ,
GSM5067056 ,
GSM5558788 ,
GSM5558789 ,
GSM5558790 ,
GSM5558791 ,
GSM5558792 ,
GSM5558793 ,
GSM5558794 ,
GSM5558795 ,
GSM5558796 ,
GSM5558797 ,
GSM5558798 ,
GSM5558799 ,
GSM5558800 ,
GSM5558801 ,
GSM5558802 ,
GSM5558803 ,
GSM5558804 ,
GSM5558805 ,
GSM5558806 ,
GSM5558807 ,
GSM5558808 ,
GSM5558809 ,
GSM5558810 ,
GSM5558811 ,
GSM5558812 ,
GSM5558813 ,
GSM5558814 ,
GSM5558815 ,
GSM5558816 ,
GSM5558817 ,
GSM6337843 ,
GSM6337844 ,
GSM6337845 ,
GSM6337846 ,
GSM6337847 ,
GSM6337848 ,
GSM6337849 ,
GSM6337850 ,
GSM6337851 ,
GSM6337852 ,
GSM6337853 ,
GSM6337854 ,
GSM6337855 ,
GSM6337856 ,
GSM6337857 ,
GSM6337858 ,
GSM6337859 ,
GSM6337860 Series (6)
GSE135005 Conditional expression of PfAP2-G for controlled massive sexual conversion in Plasmodium falciparum [array]
GSE135006 Conditional expression of PfAP2-G for controlled massive sexual conversion in Plasmodium falciparum
GSE166258 Expression patterns of Plasmodium falciparum clonally variant genes at the onset of a blood infection in non-immune humans
GSE183526 Adaptation of Plasmodium falciparum to growth in medium lacking a lipids supplement is associated with mutations in the pfndh2 gene
GSE208131 Patterns of heterochromatin distribution alterations linked to transcriptional changes at Plasmodium falciparum clonally variant gene loci [gene expression]
GSE208561 Patterns of heterochromatin distribution alterations linked to transcriptional changes at Plasmodium falciparum clonally variant gene loci
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE 1
96
164
GE_BrightCorner
GE_BrightCorner
pos
2
96
162
DarkCorner
DarkCorner
pos
3
96
160
DarkCorner
DarkCorner
pos
4
96
158
PFF1065C_v7.1_P4/4
PFF1065C_v7.1_P4/4
FALSE
PF3D7_0622100
unmapped
conserved Plasmodium protein unknown function
CTCCTCATTACTTTATATCCTCTAAAAATAGGGATAAAGAACCTCAAGACAAAACACATA
5
96
156
PFC0210C_v7.1_P2/2
PFC0210C_v7.1_P2/2
FALSE
PF3D7_0304600
unmapped
circumsporozoite (CS) protein
GATGAAAATGCTAATGCCAACAGTGCTGTAAAAAATAATAATAACGAAGAACCAAGTGAT
6
96
154
PFI0530C_v7.1_P2/2
PFI0530C_v7.1_P2/2
FALSE
PF3D7_0910900
unmapped
DNA primase large subunit putative
AAGCATATGTAGCCAAAGATTTCAGACAAAATTATGAACACACACAAGATACTAGATTGT
7
96
152
PFC0500W_v7.1_P1/2
PFC0500W_v7.1_P1/2
FALSE
PF3D7_0311800
unmapped
conserved protein unknown function
GTGAGAAGGAAGGGAATTTAAAAGAAGGTGAAGAAGAAAAAATATTTGAAGATGCACTAA
8
96
150
PFL0730W_v7.1_P3/3
PFL0730W_v7.1_P3/3
FALSE
PF3D7_1215100
unmapped
conserved Plasmodium protein unknown function
ATGCTACTCCAAAATATTTCTCTGTATATGGTATGGTTGATTTAAATTGGCCTGAACAAT
9
96
148
PF10_0342_v7.1_P1/2
PF10_0342_v7.1_P1/2
FALSE
PF3D7_1035100
unmapped
probable protein unknown function
CTGAGTTACCAAGTGATTCAATACAAGTGAATAAAGATAACAGAATTCATTTAGATGGAC
10
96
146
PF14_0466_v7.1_P1/1
PF14_0466_v7.1_P1/1
FALSE
PF3D7_1448800
unmapped
Appr-1-p processing domain protein
CTTTGGAGATCTGTCATATTTAAAAGGTGATGCTGTTGTTAATGGAACAAACAAAGTTTT
11
96
144
MAL7P1.201_v7.1_P3/4
MAL7P1.201_v7.1_P3/4
FALSE
PF3D7_0705600
unmapped
RNA helicase putative
AAGTGGTTGATGATGAAATAGAAAAAAGACAAGGTGAATTAGGTCCCATTTTAGAAAAAG
12
96
142
PFF0195C_v7.1_P1/6
PFF0195C_v7.1_P1/6
FALSE
PF3D7_0604000
unmapped
conserved Plasmodium protein unknown function
ATAAAGATAAGTGTAAAGGTAAGTGTAAGTGTGTGAGTGAAAGTAAGCTTATGAATGAGA
13
96
140
PFL0520C_v7.1_P2/3
PFL0520C_v7.1_P2/3
FALSE
PF3D7_1210400
unmapped
general transcription factor 3C polypeptide 5 putative
AATGAACAGCTCGAAAAATATAATGAATAATAAACCCACAGAATTGAATGCTAACACAGG
14
96
138
PFL1960W_v7.1_P2/7
PFL1960W_v7.1_P2/7
FALSE
PF3D7_1240600
unmapped
erythrocyte membrane protein 1 PfEMP1
AAAAAGAAAGGTGGTAAATGGGAAGCTAAAAATGATGATAAATGCAAGCGTGGAAAACTT
15
96
136
MAL8P1.90_v7.1_P1/1
MAL8P1.90_v7.1_P1/1
FALSE
unmapped
GCGATTCTGTATTTAGAAAAAGAAGATATAAATCATCAAACAATGTTAGAATATTTTCAA
16
96
134
PF14_0191_v7.1_P1/2
PF14_0191_v7.1_P1/2
FALSE
PF3D7_1419700
unmapped
conserved Plasmodium protein unknown function
ATACAGATAGTAGCACTGAAGGAGACGAGTTTGATATTGTTTTAAATAGTGTTGTGATTA
17
96
132
MAL13P1.380_v7.1_P5/22
MAL13P1.380_v7.1_P5/22
FALSE
PF3D7_1343800
unmapped
conserved Plasmodium protein unknown function
AGCCTTAATTTAAATCCAGTAAAAGTCGTAAGTCAATTATCTAAAAGATCAGAATCGTAT
18
96
130
PF08_0108_v7.1_P1/2
PF08_0108_v7.1_P1/2
FALSE
PF3D7_0808200
unmapped
plasmepsin X
TATTTGATTGTACCGGGTGTTTATTCGAGGAAAAAGAATCTTCTCATGTGATACCTTTAA
19
96
128
PF07_0066_v7.1_P3/4
PF07_0066_v7.1_P3/4
FALSE
PF3D7_0716000
unmapped
RNA-binding protein putative
ATGGAGATGAAACATCAGACACATATATAAGCTTAGTAGAATATGTAAATACCGAGAATG
20
96
126
PF14_0343_v7.1_P5/7
PF14_0343_v7.1_P5/7
FALSE
PF3D7_1436200
unmapped
conserved Plasmodium protein unknown function
TATTATTCAATACGATGATGAGAAATACAAAATATGTGACCCATCAAAGGTGTACCCTTA
15744 2693 Kbytes .Supplementary data files not provided
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