NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL2699 Query DataSets for GPL2699
Status Public on Oct 01, 2005
Title Populus 2.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Populus trichocarpa
Manufacturer NimbleGen
Manufacture protocol Propriety in situ oligonucleotide synthesis.
Support unknown
Coating unknown
 
Description This array has probes designed from gene models taken from the Joint Genome Institute Populus trichocarpa genome sequence, as well as probes designed using aspen ESTs.
 
Contributor(s) DiFazio S, Brunner A, Dharmawardhana P, Munn K
Submission date Jul 28, 2005
Last update date Oct 01, 2005
Contact name Andrew Groover
E-mail(s) agroover@fs.fed.us
Phone 530-758-1060
Organization name USDA Forest Service
Department Institute of Forest Genetics
Lab Groover
Street address 1100 West Chiles Rd
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Samples (36) GSM66737, GSM66744, GSM66748, GSM69864, GSM69865, GSM69866 
Series (5)
GSE3027 Populus homeobox gene ARK2 overexpression
GSE7098 Identification of rust-induced genes in poplar using Populus 2.0 NimbleGen oligoarray
GSE16662 Expression profiling of in vitro Poplar roots during early interaction with the ectomycorrhizal fungus Laccaria bicolor

Data table header descriptions
ID
GENE_EXPR_OPTION Control vs experimental probes
SEQ_ID Accession assigned by NimbleGen to gene
PROBE_ID Identifies probe within gene
POSITION Position on array
Gene Accession name from the Joint Genome Institute, Populus database (http://www.jgi.doe.gov/)
Best Hit Highest scoring protein BLAST return using Populus gene as query, against Arabidopsis protein database
Hit Def Definition line of best Arabidopsis BLAST return
SEQUENCE Sequence of the probe used

Data table
ID GENE_EXPR_OPTION SEQ_ID PROBE_ID POSITION Gene Best Hit Hit Def SEQUENCE
1 AMBION AE000151 CTRL00P000000012 587 GTCGGCGTGACGCCAGCCTGCGGCTACATTGGGGTTGGCGGCGCGTTGATTATCGGCGTG
2 AMBION AE000151 CTRL00P000000013 626 GTCGGCGTGACGCCAGCCTGCGGCTACATTGGGGTTGGCGGCGCGTTGATTATCGGCGTG
3 AMBION AE000151 CTRL00P000000014 656 GTCGGCGTGACGCCAGCCTGCGGCTACATTGGGGTTGGCGGCGCGTTGATTATCGGCGTG
4 AMBION AE000151 CTRL00P000000015 686 GTCGGCGTGACGCCAGCCTGCGGCTACATTGGGGTTGGCGGCGCGTTGATTATCGGCGTG
5 AMBION AE000151 CTRL00P000000016 716 GTCGGCGTGACGCCAGCCTGCGGCTACATTGGGGTTGGCGGCGCGTTGATTATCGGCGTG
6 AMBION AE000151 CTRL00P000000017 746 GTCGGCGTGACGCCAGCCTGCGGCTACATTGGGGTTGGCGGCGCGTTGATTATCGGCGTG
7 AMBION AE000151 CTRL00P000000018 776 GTCGGCGTGACGCCAGCCTGCGGCTACATTGGGGTTGGCGGCGCGTTGATTATCGGCGTG
8 AMBION AE000151 CTRL00P000000019 806 GTCGGCGTGACGCCAGCCTGCGGCTACATTGGGGTTGGCGGCGCGTTGATTATCGGCGTG
9 AMBION AE000151 CTRL00P000000020 836 GTCGGCGTGACGCCAGCCTGCGGCTACATTGGGGTTGGCGGCGCGTTGATTATCGGCGTG
10 AMBION AE000151 CTRL00P000000021 870 GTCGGCGTGACGCCAGCCTGCGGCTACATTGGGGTTGGCGGCGCGTTGATTATCGGCGTG
11 AMBION AE000151 CTRL00P000000022 909 GTCGGCGTGACGCCAGCCTGCGGCTACATTGGGGTTGGCGGCGCGTTGATTATCGGCGTG
12 AMBION AE000151 CTRL00P000000023 939 GTCGGCGTGACGCCAGCCTGCGGCTACATTGGGGTTGGCGGCGCGTTGATTATCGGCGTG
13 AMBION AE000184 U00096 CTRL00P000000066 1536 TATTACGCGGGTACGTCATCAATCTCCGCTAACGTACCGTTTGGCGCGCAGACTATGGCA
14 AMBION AE000184 U00096 CTRL00P000000067 1581 TATTACGCGGGTACGTCATCAATCTCCGCTAACGTACCGTTTGGCGCGCAGACTATGGCA
15 AMBION AE000184 U00096 CTRL00P000000068 1624 TATTACGCGGGTACGTCATCAATCTCCGCTAACGTACCGTTTGGCGCGCAGACTATGGCA
16 AMBION AE000184 U00096 CTRL00P000000069 1654 TATTACGCGGGTACGTCATCAATCTCCGCTAACGTACCGTTTGGCGCGCAGACTATGGCA
17 AMBION AE000184 U00096 CTRL00P000000070 1684 TATTACGCGGGTACGTCATCAATCTCCGCTAACGTACCGTTTGGCGCGCAGACTATGGCA
18 AMBION AE000184 U00096 CTRL00P000000071 1715 TATTACGCGGGTACGTCATCAATCTCCGCTAACGTACCGTTTGGCGCGCAGACTATGGCA
19 AMBION AE000184 U00096 CTRL00P000000072 1745 TATTACGCGGGTACGTCATCAATCTCCGCTAACGTACCGTTTGGCGCGCAGACTATGGCA
20 AMBION AE000184 U00096 CTRL00P000000073 1775 TATTACGCGGGTACGTCATCAATCTCCGCTAACGTACCGTTTGGCGCGCAGACTATGGCA

Total number of rows: 388340

Table truncated, full table size 85405 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap