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Status
Public on Jan 01, 2024
Title
Agilent-086353 Corynebacterium glutamicum Cgl_NC003450.3_v2
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Corynebacterium glutamicum
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Whole transcriptome of C. glutamicum ATCC 13032 + heterologous sequences, NCBI genome, version from 10. March, 2020 Arrays of this design have barcodes that begin with 16086353 or 2586353. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Oct 27, 2022
Last update date
Jan 01, 2024
Contact name
Michael Kohlstedt
E-mail(s)
michael.kohlstedt@uni-saarland.de
Organization name
Saarland University
Street address
Campus A1.5
City
Saarbruecken
ZIP/Postal code
66123
Country
Germany
Samples (12)
GSM6689671 , GSM6689672 , GSM6689673 , GSM6689674 , GSM6689675 , GSM6689676
Series (3)
GSE216733
Gene expression in glucose-grown L-pipecolic acid production strains C.glutamicum LPA-1A and LPA-5 compared to the non-L-pipecolic acid-producing strain C. glutamicum LPA-0 [1]
GSE216735
Gene expression in glucose-grown L-pipecolic acid production strains C.glutamicum LPA-1A and LPA-5 compared to the non-L-pipecolic acid-producing strain C. glutamicum LPA-0 [2]
GSE216736
Gene expression in glucose-grown L-pipecolic acid production strains C.glutamicum LPA-1A and LPA-5 compared to the non-L-pipecolic acid-producing strain C. glutamicum LPA-0
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
NAME
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
REFSEQ
RefSeqAccession
GB_ACC
GenBankAccession
LOCUSLINK_ID
LocuslinkID
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
UNIGENE_ID
UnigeneID
ENSEMBL_ID
EnsemblID
TIGR_ID
TIGRID
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
CYTOBAND
Cytoband
DESCRIPTION
Description
GO_ID
GoIDs
SEQUENCE
Sequence
Data table
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
REFSEQ
GB_ACC
LOCUSLINK_ID
GENE_SYMBOL
GENE_NAME
UNIGENE_ID
ENSEMBL_ID
TIGR_ID
ACCESSION_STRING
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
GO_ID
SEQUENCE
1
192
328
GE_BrightCorner
GE_BrightCorner
pos
2
192
326
DarkCorner
DarkCorner
pos
3
192
324
DarkCorner
DarkCorner
pos
4
192
322
CUST_422_PI448095888
CUST_422_PI448095888
FALSE
CGL_RS00750
unmapped
ATTCAGATCTCAAAGATGCCGAATGGATCTCCGTTGCTGCAATTAACCGCTCACAAAATT
5
192
320
CUST_3058_PI448095888
CUST_3058_PI448095888
FALSE
CGL_RS05265
unmapped
CAGATACGGAAGGTCCGCTGCGCATCAACTTAGATGATGTGGAAGTCATTGAAACTGAAG
6
192
318
CUST_2406_PI448095888
CUST_2406_PI448095888
FALSE
CGL_RS04170
unmapped
GTTTACAAGAACTACGATCCACGTGCAGCAATCGTCAAGGAGACCGCACACGAGATC
7
192
316
CUST_8009_PI448095888
CUST_8009_PI448095888
FALSE
CGL_RS13785
unmapped
CATGGGACGAAGACATCACCGACTGCAAGACCTTCGAGGATCTTCCACAAAAG
8
192
314
CUST_3029_PI448095888
CUST_3029_PI448095888
FALSE
CGL_RS05225
unmapped
CGATTGATGAGTCTTTGGCGAAAATTGGCTTGGATTATGTCGATCTGATGCTCATTCACT
9
192
312
CUST_5118_PI448095888
CUST_5118_PI448095888
FALSE
CGL_RS08810
unmapped
ATTGCAGTGAACTCTGATACCTCAGAAAACGCTGCTGTTAATCCAGTTCTGTCCGATATT
10
192
310
CUST_2141_PI448095888
CUST_2141_PI448095888
FALSE
CGL_RS03695
unmapped
CGTCAGCGAATTCCTTGAAAAGACCGAAGATCCACCAACCGATCAGATCAACG
11
192
308
CUST_6128_PI448095888
CUST_6128_PI448095888
FALSE
CGL_RS10500
unmapped
CAGGTGGAAAACCATAAGCTTCCAACGGTGGCTAGTCATTTAGGGTTTGAGCTGAAAAAC
12
192
306
CUST_1968_PI448095888
CUST_1968_PI448095888
FALSE
CGL_RS03405
unmapped
GAAGAGATGTCCCGACAGGTGCAACCAATCGTCGAAAAGCTAGTGCAGATT
13
192
304
CUST_8429_PI448095888
CUST_8429_PI448095888
FALSE
CGL_RS14500
unmapped
GAACTTGGCTGGAATGCTCTCTATTTAGATCGTTCCGGAACCGATCCACGC
14
192
302
CUST_4796_PI448095888
CUST_4796_PI448095888
FALSE
CGL_RS08240
unmapped
GTTCTTCCTCAACTACGAGGATTCCCCACTGGCACCGAACTACACCTACTTC
15
192
300
CUST_6944_PI448095888
CUST_6944_PI448095888
FALSE
CGL_RS11880
unmapped
CATCACCGTCAACGTTGATGTGATGGCAAGTCGCGTCAATGGACCAAC
16
192
298
CUST_4793_PI448095888
CUST_4793_PI448095888
FALSE
CGL_RS08235
unmapped
GATGATTTGGTGGAATACATCACCACGAATAATTTGAGCGTGGACAAGATTGTGCTCACC
17
192
296
CUST_7473_PI448095888
CUST_7473_PI448095888
FALSE
CGL_RS12875
unmapped
CTTGGACCAGGAAAGCGTCTCTACGGACTGCTTCCAACCAACGAACTC
18
192
294
CUST_236_PI448095888
CUST_236_PI448095888
FALSE
CGL_RS00440
unmapped
CTTTCTTAACTCTGCAAAAACCAAGACCGTAGCCCTCACCGCAACCTTCGTTG
19
192
292
CUST_6172_PI448095888
CUST_6172_PI448095888
FALSE
CGL_RS10575
unmapped
TCTCGGATACTTTATTAACCCCCTGTTAAGTGTCGTGCTTGGCATTGTGTTCTTCAAAGA
20
192
290
CUST_3129_PI448095888
CUST_3129_PI448095888
FALSE
CGL_RS05385
unmapped
ATCATTGACCGGATCATCAGTATTACTGACGGCGAAGATGTCCAACCTGCAGAGTTGATC
Total number of rows: 62976 Table truncated, full table size 9273 Kbytes .
Supplementary data files not provided