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Status
Public on Jan 30, 2007
Title
pombe 44K_v2
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Schizosaccharomyces pombe Manufacturer
Agilent
Manufacture protocol
Custom 60mer oligonucleotide microarrays based upon Agilent’s non-contact in situ synthesis process.
Support
glass
Coating
unknown
Description
Agilent 60mer oligo arrays tiling entire S. pombe genome across 3 chromsomes at 300bp interval alternately from the plus and minus strand.ftp://ftp.sanger.ac.uk/pub/yeast/pombe/Chromosome_contigs/OLD/Sep_15_2004/
Web link
http://www.agilent.com/ Contributor(s)
Sugiyama T , Cam HP , Sugiyama R , Noma K , Zofall M , Kobayashi R , Grewal SI Submission date
Dec 19, 2006
Last update date
Jan 30, 2007
Contact name
Shiv Grewal
Phone
2407607553
Organization name
NCI
Department
LBMB
Lab
Shiv Grewal
Street address
NCI bldg 37 Rm 6068 9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (51)
GSM151870 , GSM151871 , GSM151872 , GSM151873 , GSM151874 , GSM151875
GSM151876 ,
GSM151877 ,
GSM151878 ,
GSM151879 ,
GSM157830 ,
GSM157833 ,
GSM162913 ,
GSM162926 ,
GSM162927 ,
GSM162985 ,
GSM163005 ,
GSM163019 ,
GSM170962 ,
GSM170963 ,
GSM170964 ,
GSM170965 ,
GSM170966 ,
GSM170967 ,
GSM171932 ,
GSM171933 ,
GSM171934 ,
GSM171935 ,
GSM171936 ,
GSM174765 ,
GSM174766 ,
GSM174767 ,
GSM174768 ,
GSM174769 ,
GSM174770 ,
GSM174771 ,
GSM174772 ,
GSM174773 ,
GSM174774 ,
GSM174775 ,
GSM174776 ,
GSM229942 ,
GSM229943 ,
GSM229944 ,
GSM229945 ,
GSM266766 ,
GSM266767 ,
GSM266768 ,
GSM266769 ,
GSM266770 ,
GSM266771 Series (9)
GSE6568 SHREC, an Effector Complex for Heterochromatic Transcriptional Silencing
GSE6845 ChIP-chip analyses of SWIRM1 and SWIRM2 across the S. pombe genome.
GSE7042 ChIP-chip analyses of H3K9 acetylation in WT, alp13 deletion and pst1-1 mutant S.pombe cells.
GSE7113 ChIP-chip analyses of H3K9 methylation in alp13 deletion and clr6-1 mutant S.pombe cells.
GSE7136 ChIP-chip analyses of H3K9 methylation in rrp6 deletion and rrp6 alp13 double mutant S.pombe cells.
GSE7160 Distinct roles of HDAC complexes in promoter silencing, antisense suppression and DNA damage protection
GSE7252 Expression profiling in alp13 deletion, clr6-1 mutant and pst1-1 mutant, versus WT S. pombe cells.
GSE9056 Host genome surveillance for retrotransposons by transposon-derived proteins
GSE10561 Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin
Data table header descriptions ID Agilent Feature ID number
SPOT_ID Probe Name (The probe name contains info about a probe's strandedness and approximate location (within 300bp window) on a given chromosome: chr1_2782_834600 indicates the 2782th probe on chromosome 1 at approximate position 834,600 bp; chr3_4893_1467900_R indicates the 4893th probe on chromosome 3 at approximate position 1,467,900 bp, reverse strand).
RANGE_START oligo chromosome start position
RANGE_END oligo chromosome end position
Description Probe description
Data table ID SPOT_ID RANGE_START RANGE_END Description 1
BrightCorner
BrightCorner
2
(-)3xSLv1
NegativeControl
3
chr2_4394_1318200
1318254
1318313
SPBC30B4.06c
4
chr2_8714_2614200_R
2614339
2614398
SPBC25B2.08
5
chr1_9062_2718600
2718766
2718825
6
chr2_14874_4462200
4462259
4462318
7
(+)Pro25G-02
Pro25G
8
chr1_14853_4455900
4461193
4461252
cbh1
9
chr3_7444_2233200_R
2233423
2233482
SPCC1919.11
10
chr3_4658_1397400_R
1397485
1397544
low complexity gene free region
11
(+)E1A_r60_a20
E1A_r60_a20
12
chr2_3350_1005000_R
1005011
1005070
cut3 SPBC146.03c
13
chr3_4274_1282200_R
1282371
1282430
14
(+)Pro25G-02
Pro25G
15
chr1_3323_996900
997071
997130
slp1
16
chr1_14388_4316400_R
4321833
4321892
SPAC27F1.03c
17
chr1_15272_4581600_R
4586947
4587006
SPAC12B10.07
18
chr3_7199_2159700_m
2159783
2159842
LTR
19
chr1_4309_1292700
1292940
1292999
20
chr2_7525_2257500
2257621
2257680
taf10 SPBC21H7.02
43807 2134 Kbytes .Supplementary data files not provided
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