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Platform GPL5112 Query DataSets for GPL5112
Status Public on Apr 24, 2007
Title MLRG/DrosoIndac Drosophila melanogaster 15K
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Drosophila melanogaster
Manufacturer Montpellier Génopole Microarray core facility
Manufacture protocol The Drosophilia Indac oligo set were spotted using the Amersham Biosciences Lucidea Array spotter on aminosilane-coated mirror glass slides (7 Star, Amersham Biosciences). Negative and positive control oligo were also printed into 24 different sectors of each slide. After printing, the slides were stored at room temperature in a dessicator.
Support glass
Coating aminosilane
 
Description The Drosophila melanogaster INDAC Oligo-chip contain 14,444 70mer probes representing 13,900 genes and 19,239 transcripts (see the International Drosophila Array Consortium website for details), All probes are designed from gene transcript sequences from the Flybase release 4.2 database (see the Flybase website for details). The library also included sets of positive and negative controls that were used for quality control purposes. Arrays were printed using the Amersham Biosciences Lucidea Array spotter on aminosilane-coated mirror glass slides (Exprexions™ slideGenExprex).
 
Web link http://www.genopole-montpellier-lr.org/PF/transcriptome/index.htm
Contributor(s) Severac D, Aknin C, Dantec C
Submission date Apr 20, 2007
Last update date Jan 18, 2013
Contact name Laurent Journot
E-mail(s) mgx@igf.cnrs.fr
URL http://www.mgx.cnrs.fr/
Organization name MGX - Montpellier GenomiX
Lab Institut de Génomique Fonctionnelle (IGF)
Street address 141 rue de la Cardonille
City Montpellier
ZIP/Postal code 34094 - Cedex 05
Country France
 
Samples (60) GSM186297, GSM186329, GSM186336, GSM186337, GSM186350, GSM186369 
Series (7)
GSE7689 Genome-wide expression profiling of Drosophila adult heart organogenesis
GSE12539 Differential gene expression analysis in the larval heart of Drosophila
GSE18615 SOP/pI vs. Epithelial cells

Data table header descriptions
ID
Block The block number on the array
Block Column Meta column
Block Row Meta row
Spot Column Spot Column in the block
Spot Row Spot row in the block
Plate Number Number plate in the spotter
384_plate_position Position of the oligos in the plate
384_plate_number Plate ID
fly_set384 Oligo supplier
Oligo_ID Oligo ID
symbol Gene symbol
SEQUENCE oSeq; oligo sequence
Transcript symbol Transcript symbol
CLONE ID Flybase_ID
ORF
SPOT_ID
Flybase full name Flybase full name
Flybase synomyms Flybase synomyms
molecular function go number Molecular function go number
cellular component go number Cellular component go number
biological process go number Biological process go number
molecular function go definition Molecular function go definition
cellular component go definition Cellular component go definition
biological process go definition Biological process go definition
SPOT ID spot identifier

Data table
ID Block Block Column Block Row Spot Column Spot Row Plate Number 384_plate_position 384_plate_number fly_set384 Oligo_ID symbol SEQUENCE Transcript symbol CLONE ID ORF SPOT_ID Flybase full name Flybase synomyms molecular function go number cellular component go number biological process go number molecular function go definition cellular component go definition biological process go definition SPOT ID
1 1 1 1 1 1 1 C1 0 LucideaOligoControl 1PC Positive control 1 Positive control 1 souris melange de House Keeping gene empty
2 1 1 1 1 2 3 L1 4 INDAC 1000031501 CG31640 ACTGCTGGGAAAACCGGTTGAAATAGTCTTTGAGTTTGATACGGTTCGCAATTTCAGTGCCATCGTCCT CG31640-RA FBgn0051640 FBgn0051640 CG13986|CG13987|CG15813|CG31640|anon-WO0073329.6 GO:0004716; GO:0007155;GO:0007165; receptor signaling protein tyrosine kinase activity; cell adhesion;signal transduction;
3 1 1 1 1 3 5 D13 6 INDAC 1000032227 CG11562 CCCCTAAATATGCACCTATTAAAATCTAAGACTAAGTCGGGGAAAACAAGAATTTCGTTGTTCAAATGT CG11562-RA FBgn0031247 FBgn0031247
4 1 1 1 1 4 8 K1 9 INDAC 1000033133 CG1291 TGTGCTGTATCCTTCACTGCACACCCAGTACTTTGACCAGATGCAGAAAAAGCTAGAACAGCGGTCTGC CG1291-RA FBgn0035401 FBgn0035401 CG1291 GO:0004376; GO:0006486;GO:0005976; glycolipid mannosyltransferase activity; protein amino acid glycosylation;polysaccharide metabolism;
5 1 1 1 1 5 10 C13 11 INDAC 1000033859 Bsg25A AGCGTTTGGAATTCGCCCTGACCCTATTGCCCTATGATCCCGAGACAGTTCAGTTGTCTGAAACGCAGA CG12205-RA FBgn0000227 FBgn0000227 Blastoderm-specific gene 25A
6 1 1 1 1 6 12 L13 13 INDAC 1000034963 CG13168 GCATAGAAGTTAAGAATATTCAAACAAGTGAAATACGCTCAAGAACATTTAATGGAAAAAAAAGCTTCA CG13168-RB FBgn0033705 FBgn0033705
7 1 1 1 1 7 15 D1 16 INDAC 1000036061 CG12398 GCCATGCCAGTGAGTGAGGTGATGGGCTTTTTCAGCACTCGTTATCAGGATCCCCGATTGGATTGG CG12398-RA FBgn0030596 FBgn0030596 CG12398 GO:0004344;GO:0050660; GO:0006118; glucose dehydrogenase (acceptor) activity;FAD binding; electron transport;
8 1 1 1 1 8 17 K13 18 INDAC 1000036595 mod(mdg4) CGAAGCACTCGCACCTGTGACCTAAGAAAACATACAAATACCTGTTGAATAAATCTTAAAGCATTTTTA CG32491-RR FBgn0002781 FBgn0002781 modifier of mdg4 BcDNA:GH07769|BcDNA:SD03001|CG15500|CG15501|CG15802|CG18151|CG32491|CG7836|CG7859|CG8076|Doom|E(var)129|E(var)3-93D|E(var)93D|E-(var)3-93D|E-var(3)1|E-var(3)3|MOD(MDG4)56.3|Mod(mdg)4|Mod(mdg4)|Mod[mdg4]|bpd|doom|l(3)03852|l(3)L3101|l(3)j2B7|mod(gypsy)|mod(mdg-4)|mod(mdg4)|mod(mdg4)67.2|mod2.2|pf-2 GO:0005515;GO:0003682;GO:0003702;GO:0008195; GO:0005700;GO:0005886;GO:0005634;GO:0000785; GO:0006333;GO:0006997;GO:0019226;GO:0008354;GO:0009993;GO:0006357;GO:0006917;GO:0007530;GO:0001672;GO:0006325;GO:0042981; protein binding;chromatin binding;RNA polymerase II transcription factor activity;phosphatidate phosphatase activity; polytene chromosome;plasma membrane;nucleus;chromatin; chromatin assembly or disassembly;nuclear organization and biogenesis;transmission of nerve impulse;germ cell migration;oogenesis (sensu Insecta);regulation of transcription from RNA polymerase II promoter;induction of apoptosis;sex determination;regulation of chromatin assembly or disassembly;establishment and/or maintenance of chromatin architecture;regulation of apoptosis;
9 1 1 1 1 9 20 C1 21 INDAC 1000037693 ik2 CGCGCACACTGACCTACAACGACGAACAGTTTCATGCCCTGGAGAAGATTAAAGTGGATCACAATGGCA CG2615-RA FBgn0028633 FBgn0028633 38D.31|CG2615|DIK2|Dik2|DmIKKepsilon|DmIKKepsilon/dIK2|Dmik2|IK2|IKKepsilon|Ik2|dIKK|dik2|ik2 GO:0005524;GO:0005351;GO:0008965;GO:0004674;GO:0008384;GO:0004672; GO:0008385; GO:0007165;GO:0006468;GO:0006952;GO:0019221;GO:0009401; ATP binding;sugar porter activity;phosphoenolpyruvate-protein phosphotransferase activity;protein serine/threonine kinase activity;IkappaB kinase activity;protein kinase activity; IkappaB kinase complex; signal transduction;protein amino acid phosphorylation;defense response;cytokine and chemokine mediated signaling pathway;phosphoenolpyruvate-dependent sugar phosphotransferase system;
10 1 1 1 1 10 22 L1 23 INDAC 1000038797 CG3356 CCCATTGACCTGGAGGATCTAAAGAAGCACTGTGAATACGGCGGTGAATTCTCTCCAGAGCACCCCTCG CG3356-RA FBgn0034989 FBgn0034989 CG3356 GO:0004842;GO:0016874; GO:0005622; GO:0006464;GO:0006508;GO:0019538;GO:0006512; ubiquitin-protein ligase activity;ligase activity; intracellular; protein modification;proteolysis;protein metabolism;ubiquitin cycle;
11 1 1 1 1 11 24 D13 25 INDAC 1000039523 CG10383 GCCATGTAAAGGTGGTCAGTGTAGCTGAAGGATCCCCTACCATGTTGACCTCGTTCAAGTTCCCCCTGC CG10383-RA FBgn0032699 FBgn0032699
12 1 1 1 1 12 27 K1 28 INDAC 1000040429 CG10275 GGCCACAGGAAATTCAACACCGTTACCGGGTTTCAGCAATATTCCCCATTGCAAGATAATACCCGTGGA CG10275-RA FBgn0032683 FBgn0032683 CG10275|CT28869 GO:0005198; GO:0007155;GO:0007165;GO:0019226;GO:0007275;GO:0007154; structural molecule activity; cell adhesion;signal transduction;transmission of nerve impulse;development;cell communication;
13 1 1 1 1 13 29 C13 30 INDAC 1000041155 CG15118 GTGTGGCGACCGTGAGATATGTCTTATATGCGATCGAACCGGGTTAGCCACATGCTTGCGTGTCCTTAA CG15118-RD FBgn0034418 FBgn0034418
14 1 1 1 1 14 31 L13 32 INDAC 1000042259 CG15927 AGTGAGGCCAAAGGTTAAGCAACAAATCAGATTGGAGAGAGCCAATCCTTTGAGGGAGGCCAAAGGTGT CG15927-RA FBgn0030389 FBgn0030389
15 1 1 1 1 15 34 D1 35 INDAC 1000043357 lin GTCTTTCAACCCAGATACATACCCAGCTGTATGTAATTGTCATTGTAATTGTAATGAGCATCACAAGTT CG11770-RA FBgn0002552 FBgn0002552 lines CG11770|Lin|lin GO:0005634;GO:0005737; GO:0008544;GO:0007440;GO:0007442;GO:0008293;GO:0007362; nucleus;cytoplasm; epidermis development;foregut morphogenesis;hindgut morphogenesis;torso signaling pathway;terminal region determination;
16 1 1 1 1 16 36 K13 37 INDAC 1000043891 CG17023 AACAGCGTTGCCAACTCTTCTCGCAGATCCACCGCAAAATATGATAGCACAAAGCCAGTCTGGGACAGG CG17023 CG17023-RB
17 1 1 1 1 17 39 C1 40 INDAC 1000044989 CG41114 AAGAAGCGTTTCGGGCACCAACAACGGAGCAGCCAGAGCCAACACAGCCGCCGGCAAAACAGCCA CG41114-RB FBgn0069935 FBgn0069935
18 1 1 1 1 18 41 L1 42 OPERON DM00016506 RpS25 CATTTGCGTGATGTTTAATTGATATAAAGATATACCCTCTTATAGAGGGATGTATCACTGAGCGCTGGT CG6684-RB FBgn0010413 FBgn0010413 Ribosomal protein S25 CG6684|D25|RpS25|RpS31|anon-EST:Posey260 GO:0003729;GO:0003735; GO:0005840;GO:0005843; GO:0006412; mRNA binding;structural constituent of ribosome; ribosome;cytosolic small ribosomal subunit (sensu Eukaryota); protein biosynthesis;
19 1 1 1 2 1 1 G1 0 LucideaOligoControl 1NC Negative control 1 Negative control 1 Randomly generated negative control empty
20 1 1 1 2 2 3 P1 4 INDAC 1000031525 CG31675 GGCGGTGCAGAACTCAAGTTGTCATGTGTGCGACAGCGAGAACTACTGCAACGGATCGGAAAATCATCC CG31675-RA FBgn0051675 FBgn0051675 BcDNA:RE19849|CG31675 GO:0005554; GO:0008372; GO:0000004; molecular function unknown; cellular component unknown; biological process unknown;

Total number of rows: 15744

Table truncated, full table size 4856 Kbytes.






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