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Platform GPL5347 Query DataSets for GPL5347
Status Public on Jun 02, 2007
Title Arizona Aphid/Buchnera 1
Technology type spotted DNA/cDNA
Distribution non-commercial
Organisms Buchnera aphidicola; Escherichia coli; Acyrthosiphon pisum
Manufacturer GATC - University of Arizona
Manufacture protocol Genes were arranged in duplicate spots on slides, with Buchnera genes grouped into the first and second of 24 subarrays. In addition to spot duplication, the entire set was printed twice on each slide with the result that each gene was represented by four spots in total.
 
Description Dual-genome microarray for the pea aphid, Acyrthosiphon pisum, and its obligate bacterial symbiont, Buchnera aphidicola.
 
Contributor(s) Moran NA, Stern DL, Hunter WB, Sprissler R, Dang PM, Davis GK, Wilson AC, Brisson JA
Submission date Jun 01, 2007
Last update date Jun 02, 2007
Contact name Gregory K. Davis
E-mail(s) gkdavis@princeton.edu
Phone 609-258-5146
URL http://www.princeton.edu/~gkdavis/
Organization name Princeton University
Department Ecology and Evolutionary Biology
Lab Stern Lab
Street address 106A Guyot Hall, Washington Road
City Princeton
State/province NJ
ZIP/Postal code 08544
Country USA
 
Samples (24) GSM197778, GSM197779, GSM197780, GSM197781, GSM197782, GSM197783 
Series (1)
GSE8008 Common genome-wide patterns of transcript accumulation underlying the wing polyphenism and polymorphism in the pea aphid

Data table header descriptions
ID feature/spot number
SPOT_NAME clone identifier or gene name
CLONE_ID Cloneid, found in DBEST
GB_ACC GenBank accession
ORGANISM the organism of the spotted sequence
SPOT_ID identifies spots without GenBank accession

Data table
ID SPOT_NAME CLONE_ID GB_ACC ORGANISM SPOT_ID
1 FUSED Acyrthosiphon pisum FUSED
2 FUSED Acyrthosiphon pisum FUSED
3 VASA Acyrthosiphon pisum VASA
4 VASA Acyrthosiphon pisum VASA
5 EYELESS Acyrthosiphon pisum EYELESS
6 EYELESS Acyrthosiphon pisum EYELESS
7 HSP-70 Acyrthosiphon pisum HSP-70
8 HSP-70 Acyrthosiphon pisum HSP-70
9 DISTALESS Acyrthosiphon pisum DISTALESS
10 DISTALESS Acyrthosiphon pisum DISTALESS
11 WINGLESS Acyrthosiphon pisum WINGLESS
12 WINGLESS Acyrthosiphon pisum WINGLESS
13 WNT2 Acyrthosiphon pisum WNT2
14 WNT2 Acyrthosiphon pisum WNT2
15 NANOS Acyrthosiphon pisum NANOS
16 NANOS Acyrthosiphon pisum NANOS
17 VASA-LIKE Acyrthosiphon pisum VASA-LIKE
18 VASA-LIKE Acyrthosiphon pisum VASA-LIKE
19 BUCHNERA_HISB Buchnera aphidicola BUCHNERA_HISB
20 BUCHNERA_HISB Buchnera aphidicola BUCHNERA_HISB

Total number of rows: 7680

Table truncated, full table size 439 Kbytes.






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