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Status
Public on Jun 27, 2008
Title
CSMA [DpnII: Mus musculus] signature list
Technology type
other
Distribution
virtual
Organism
Mus musculus
Description
Contains annotation and mapping information for canonical signatures
Submission date
Jun 28, 2007
Last update date
Jun 27, 2008
Contact name
Daixing Zhou
E-mail(s)
dzhou@solexa.com Phone
510-670-9441
Fax
510-670-9302
URL
http://www.solexa.com Organization name
Solexa
Department
Bioinformatics
Street address
25861 Industrial Blvd
City
Hayward
State/province
CA
ZIP/Postal code
94545
Country
USA
Samples (14)
GSM206364 , GSM206365 , GSM206366 , GSM206367 , GSM206368 , GSM206369
Series (1)
GSE8324 CSMA mouse transcriptome analysis project
Data table header descriptions ID CSMA Signature, 20 nt sequence including DpnII site (GATC)
SEQ_ID REPEAT if hit genome more than 100 locations; Mitochondrion gene name if hit mitochondrion genome; UniGene cluster ID if hit one or more Unigene clusters; Chromosome number if hit one genome location; MultiGenome if hit genome multiple times
SIG_CLASS signature class
SPOT_ID GB_ACC GenBank accession number
DESCRIPTION UniGene cluster title for the signatures with UniGene annotation
Data table ID SEQ_ID SIG_CLASS SPOT_ID GB_ACC DESCRIPTION GATCCTCGGGGATGTCTTCC
Mm.22957
1
BC099409 Progastricsin (pepsinogen C)
GATCACGCAGTTAGCTGGGT
Mm.21160
1
BC042935 Colipase, pancreatic
GATCTGGCTGGTGACACAGT
Mm.281379
1
CF622112 Caspase 6
GATCACCTGCAGCGCCAAAA
Mm.20190
1
BG798871 Phospholipase A2, group IB, pancreas
GATCCTGGGAGTCTCCATCT
Mm.46446
2
AK007451 RIKEN cDNA 1810036H07 gene
GATCAGGGCAATGGTCACTG
Mm.6853
1
BC010818 Small proline-rich protein 2A
GATCAGGGAAAATTTCCTCT
Mm.46418
1
NM_023186 Chitinase, acidic
GATCTGCTTCAATAATTTAA
COX2
4
mtDNA
COX2; Mm mtDNA, cytochrome c oxidase subunit II
GATCTTTGAAGTGCCCTGGT
Mm.1825
3
BC050086 Trefoil factor 2 (spasmolytic protein 1)
GATCAACAAATCTCCTAGGC
ATP6
4
mtDNA
ATP6; Mm mtDNA, ATP synthase F0 subunit 6
GATCAAACAACCCAACAGGA
4
mtDNA
CYTB; Mm mtDNA, cytochrome b
GATCTTTATAATTTGAGAGG
COX1
4
mtDNA
COX1; Mm mtDNA, cytochrome c oxidase subunit I
GATCCCACTGCACATAGGAC
ND2
4
mtDNA
ND2; Mm mtDNA, NADH dehydrogenase subunit 2
GATCAACTTATACATCTTCT
ND1
4
mtDNA
ND1; Mm mtDNA, NADH dehydrogenase subunit 1
GATCACCATTGACGACTTCC
Mm.22957
2
AK160474 Progastricsin (pepsinogen C)
GATCAAACTTTACCATTATT
ND4
4
mtDNA
ND4; Mm mtDNA, NADH dehydrogenase subunit 4
GATCCAGAAGCAGTGGAATC
Mm.100615
4
CF735602 Chromodomain helicase DNA binding protein 9
GATCACCCAAGGGTCCCATG
Mm.334332
1
CF621354 Mucin 5, subtypes A and C, tracheobronchial/gastric
GATCAGCGCCTCCAGTTCCT
Mm.213025
1
BC064800 Actin, alpha 2, smooth muscle, aorta
GATCCGGAAACTTGGAGTTC
Mm.12821
1
BC015262 ATPase, H+/K+ exchanging, alpha polypeptide
103515 7723 Kbytes .Supplementary data files not provided
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