GEO help: Mouse over screen elements for information.
Status
Public on Jul 17, 2008
Title
AURATUS: The goldfish environmental genomics project 17K array v1.1
Technology type
spotted DNA/cDNA
Distribution
custom-commercial
Organisms
Carassius auratus ; Cyprinus carpio Manufacturer
University of Liverpool; Laboratory for Environmental Gene Regulation (LEGR)
Manufacture protocol
see Gracey et al. Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate. Proc Natl Acad Sci USA 101:16970-5, 2004. and
Support
glass
Coating
polysine
Web link
http://www.auratus.ca Contributor(s)
Popesku JT , Martyniuk CJ , Mennigen J , Wiens SC , Lado W , Zhang D , Marlatt VL , Cameron C , Crump K , Gerrie E , Xia X , Cossins AR , Trudeau VL Submission date
Jul 16, 2008
Last update date
Jul 18, 2008
Contact name
Jason T. Popesku
E-mail(s)
jpope078@uottawa.ca Organization name
University of Ottawa
Department
Biology
Lab
Trudeau
Street address
20 Marie Curie
City
Ottawa
State/province
ON
ZIP/Postal code
K1N 6N5
Country
Canada
Samples (29)
GSM307909 , GSM307910 , GSM307911 , GSM307912 , GSM364185 , GSM364186
GSM364187 ,
GSM364188 ,
GSM364189 ,
GSM393130 ,
GSM393131 ,
GSM393132 ,
GSM393133 ,
GSM393152 ,
GSM393153 ,
GSM393154 ,
GSM393155 ,
GSM393156 ,
GSM393157 ,
GSM393158 ,
GSM393159 ,
GSM393160 ,
GSM393183 ,
GSM393184 ,
GSM393185 ,
GSM1027374 ,
GSM1027375 ,
GSM1027376 ,
GSM1027377 Series (8)
GSE12252 AURATUS goldfish environmental genomics projects: lumiestrone in the liver
GSE14558 AURATUS goldfish environmental genomics projects: fadrozole in the telencephalon
GSE15705 AURATUS goldfish environmental genomics projects: sulpiride in the telencephalon
GSE15706 AURATUS goldfish environmental genomics projects: sulpiride in the hypothalamus
GSE15707 AURATUS goldfish environmental genomics projects: SCH 23390 in the telencephalon
GSE15708 AURATUS goldfish environmental genomics projects: SCH 23390 in the hypothalamus
GSE15763 AURATUS goldfish environmental genomics projects: dopamine antagonists
GSE41918 Gene Expression in Forebrain of Male Goldfish Following Exposure to Waterborne Sex Pheromones
Data table header descriptions ID Array_Row spot coordinate on platform
Array_Column spot coordinate on platform
Row spot coordinate on platform
Column spot coordinate on platform
Name spot location
Reporter_Identifier_Carp sequence from carp
Reporter_Identifer_goldfish sequence from goldfish
Reporter_Name gene
Reporter_BioSequence_Type cDNA versus control, blank
Reporter_BioSequence_Polymer_Type material spotted
GB_ACC NCBI accession number if available for sequence
Reporter_Group_Role experimental
Reporter_Control_Type control
SPOT_ID
Data table ID Array_Row Array_Column Row Column Name Reporter_Identifier_Carp Reporter_Identifer_goldfish Reporter_Name Reporter_BioSequence_Type Reporter_BioSequence_Polymer_Type GB_ACC Reporter_Group_Role Reporter_Control_Type SPOT_ID 1
1
1
1
1
61m12
61m12
61M12 Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H
cDNA_clone
DNA
EX823461 Experimental
2
1
1
1
2
61o12
61o12
61O12 Hypothetical protein ygaF
cDNA_clone
DNA
EX823502 Experimental
3
1
1
1
3
61a24
61a24
61A24 Protein C20orf24 homolog
cDNA_clone
DNA
EX823287 Experimental
4
1
1
1
4
61c24
61c24
61C24 unknown
cDNA_clone
DNA
Experimental
61C24 unknown
5
1
1
1
5
61e24
61e24
61E24 Voltage-gated potassium channel beta-2 subunit (K(+)
cDNA_clone
DNA
EX823353 Experimental
6
1
1
1
6
61g24
61g24
61G24 hypothetical protein LOC550520 [Danio rerio]
cDNA_clone
DNA
EX823383 Experimental
7
1
1
1
7
61i24
61i24
61I24 Unclassifiable EST
cDNA_clone
DNA
EX823409 Experimental
8
1
1
1
8
61k24
61k24
61K24 PREDICTED: similar to adenylate kinase 5 isoform 1 [Danio rerio]
cDNA_clone
DNA
EX823436 Experimental
9
1
1
1
9
61m24
61m24
61M24 Unclassifiable EST
cDNA_clone
DNA
EX823470 Experimental
10
1
1
1
10
61o24
61o24
61O24 Unclassifiable EST
cDNA_clone
DNA
EX823513 Experimental
11
1
1
1
11
84a12
CA-65
RXRbeta-b
cDNA
DNA
EU313779 Experimental
12
1
1
1
12
84c12
84c12
buffer
buffer
buffer
buffer
buffer
buffer
13
1
1
1
13
blank
blank
blank
blank
blank
blank
14
1
1
1
14
blank
blank
blank
blank
blank
blank
15
1
1
1
15
blank
blank
blank
blank
blank
blank
16
1
1
1
16
blank
blank
blank
blank
blank
blank
17
1
1
1
17
blank
blank
blank
blank
blank
blank
18
1
1
1
18
blank
blank
blank
blank
blank
blank
19
1
1
1
19
blank
blank
blank
blank
blank
blank
20
1
1
2
1
60g12
60g12
60G12 unknown
cDNA_clone
DNA
Experimental
60G12 unknown
17328 1706 Kbytes .Supplementary data files not provided
Less...
More...