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| Status |
Public on Feb 01, 2009 |
| Title |
Eurogentec AG S. pombe ORF array 11k (spD080C) |
| Technology type |
spotted DNA/cDNA |
| Distribution |
custom-commercial |
| Organism |
Schizosaccharomyces pombe |
| Manufacturer |
Eurogentec AG |
| Manufacture protocol |
Primary PCR: The PCR reactions are performed using tagged genome specific primers in the presence of genomic DNA (provided by your laboratory). We normally achieve a success rate of 93 % of PCR reactions. For the failed PCR reactions we perform three different protocols of PCR conditions, which include different MgCl2 concentrations and different Taq polymerase. We should normally get an additional 2 % working and reach a success rate of 95 % in total. We check 5 % of the total oligos by Mass Spectrometry and will re-synthesize maximum 2 % of the oligos based on a newly designed primer. We will perform the PCR reactions with the new designed oligonucleotides with the standard PCR protocol. Following this process we reach usually 97 % success rate.
Secondary PCR: amplifications will be performed using a single pair of primers annealing to tag sequences introduced on primary PCR primers. These PCR amplifications will also be controlled by agarose gel electrophoresis and repeated if required reaching a minimum of 95 % success rate. The final PCR products will contain an amino group at their 5' end to promote the attachment of the predicted gene coding DNA strand to the treated glass slides.
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| Support |
glass |
| Coating |
unknown |
| |
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| Description |
Schizosaccharomyces pombe
4976 ORFs spotted in duplicate on glass slide
Keywords = yeast ORF DNA microarray
Reference: Xue Y, Haas SA, Brino L, Gusnanto A et al. A DNA microarray for fission yeast: minimal changes in global gene expression after temperature shift. Yeast 2004 Jan 15;21(1):25-39. PMID: 14745780
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| |
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| Web link |
http://www.eurogentec.com/
|
| Contributor(s) |
Xue-Franzen Y, Johnsson A, Wright A |
| Citation(s) |
14745780 |
| Submission date |
Dec 03, 2008 |
| Last update date |
Feb 01, 2009 |
| Contact name |
Anthony Wright |
| E-mail(s) |
yongtao.xue.franzen@ki.se
|
| Organization name |
Karolinska Institute
|
| Lab |
Anthony Wright
|
| Street address |
Blickagången 6
|
| City |
Huddinge |
| ZIP/Postal code |
141 57 |
| Country |
Sweden |
| |
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| Samples (3) |
GSM347643, GSM432214, GSM432215 |
| Series (3) |
| GSE13817 |
Deletion of Clr3 restores expression of a subset of genes in gcn5- mutant cells |
| GSE17259 |
S. pombe acetyltransferase mutants identifies redundant pathways of gene regulation, dual-channel dataset |
| GSE17298 |
Expression profiling of S. pombe acetyltransferase mutants identifies redundant pathways of gene regulation |
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