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Status
Public on Apr 01, 2009
Title
Yeast two-species array for S.cerevisiae and S.paradoxus (2 X 105K)
Technology type
in situ oligonucleotide
Distribution
non-commercial
Organisms
Saccharomyces cerevisiae ; Saccharomyces paradoxus
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Contributor(s)
Tirosh I
Submission date
Feb 04, 2009
Last update date
Apr 01, 2009
Contact name
Itay Tirosh
E-mail(s)
itay.tirosh@weizmann.ac.il
Organization name
Weizmann Institute of Science
Department
Molecular genetics
Lab
Naama Barkai
Street address
herzl
City
Rehovot
ZIP/Postal code
76100
Country
Israel
Samples (56)
GSM367220 , GSM367221 , GSM367222 , GSM367223 , GSM367224 , GSM367225
GSM367226 ,
GSM367227 ,
GSM367228 ,
GSM367229 ,
GSM367230 ,
GSM367231 ,
GSM367232 ,
GSM367233 ,
GSM367234 ,
GSM367235 ,
GSM367236 ,
GSM367237 ,
GSM367238 ,
GSM367239 ,
GSM588474 ,
GSM588475 ,
GSM588476 ,
GSM588477 ,
GSM588478 ,
GSM588479 ,
GSM588480 ,
GSM588481 ,
GSM588482 ,
GSM588483 ,
GSM588484 ,
GSM588485 ,
GSM588486 ,
GSM588487 ,
GSM588488 ,
GSM588489 ,
GSM588490 ,
GSM588491 ,
GSM588492 ,
GSM588493 ,
GSM588494 ,
GSM588495 ,
GSM588496 ,
GSM588497 ,
GSM588498 ,
GSM588499 ,
GSM588500 ,
GSM588501 ,
GSM588502 ,
GSM588503 ,
GSM588504 ,
GSM588505 ,
GSM588506 ,
GSM588507 ,
GSM588508 ,
GSM588509
Series (2)
GSE14708
Comparative analysis of gene expression in two yeast species and their interspecific hybrid
GSE23866
Chromatin regulators as capacitors of inter-species expression variations
Data table header descriptions
ID
Unique identifier of the probe defined as species_gene_position, where 'species' indicate if it is a probe for S.cerevisiae(1) or for S.paradoxus(2), gene is an index for the gene represented by the probe, position is the position of the probe sequence within the respective gene
ORGANISM
ORF
Name of the S.cerevisiae ORF
SEQUENCE
Probe sequence
species_similarity
percentage of identical base-pairs in the alignment of the this probe and the corresponding orthologous probe for the other yeast species
SPOT_ID
S. cerevisiae ortholog for S. paradoxus ORF
Data table
ID
ORGANISM
ORF
SEQUENCE
species_similarity
SPOT_ID
1_1_2678
Saccharomyces cerevisiae
YAL001C
AATTCTCAGACAAAATTGAATACAGCAAGGAAGTCTGCTGTCAAAGTTCCACTGGGCAAA
0.78333
2_1_2678
Saccharomyces paradoxus
AAATCTCAGAGAAAGTGGAATACACCAAAAAATTCGGCTGTCAAGATCCCACTTGGCAAA
0.78333
S. cerevisiae YAL001C ortholog
1_1_2836
Saccharomyces cerevisiae
YAL001C
AGGGATAACATTGAGTAGATTGCAATCTAGGTGTCGTGAAGTACTTTCGCTTCATGAAAT
0.85
2_1_2836
Saccharomyces paradoxus
GATAACGTTAAGTAGACTGCAATTTAGATGCCATGAAGTGCTTTCGCTCCATGAAATATC
0.85
S. cerevisiae YAL001C ortholog
1_1_2587
Saccharomyces cerevisiae
YAL001C
AATTCCAATGGTGAGAAATGTTCGACCTTTAACGTATACTTCAAGGAGATTTGAAATACG
0.85
2_1_2587
Saccharomyces paradoxus
ATTCCAATGATGAGGAACGTTCGGCCATTAACTTATACCTCAAGAAGATTTGAAATAAGA
0.85
S. cerevisiae YAL001C ortholog
1_1_2077
Saccharomyces cerevisiae
YAL001C
AAATTTACTCTGGTACGTGATGACACACTTACACATTCTGGCAACGATCTGGCCATGTCT
0.81967
2_1_2077
Saccharomyces paradoxus
ATAGGAAAAGATTCACTTTGGTCCGTGACGATACATTACCACATTCTACCAATGATCTGG
0.81967
S. cerevisiae YAL001C ortholog
1_2_906
Saccharomyces cerevisiae
YAL002W
AGACTTAATCATCATGTTAAATCCTACTACGCTTGATGTTGATCTTGCCGTCAAACTATG
0.78333
2_2_906
Saccharomyces paradoxus
TGAGGACTTGATTATTATGCTAGATCCTGCTACACTAGATGTGGATCTAGCTGTCAAATT
0.78333
S. cerevisiae YAL002W ortholog
1_2_1164
Saccharomyces cerevisiae
YAL002W
ACAAAACTTGTCTATATCACCAAGTGATAAATGCTCCAAAATACAAAGGGAACTTTCAGC
0.8
2_2_1164
Saccharomyces paradoxus
AGAACTTGTCCATATCTCCCAGTAGTAAATGCATTGAAATACAAAGAGAACTCTCAGCAT
0.8
S. cerevisiae YAL002W ortholog
1_2_1932
Saccharomyces cerevisiae
YAL002W
CTCAAGGATCGGTATCGAAAAATGCGTCACAATTTTTTCTGACTTTGACTATAATCTTCA
0.81667
2_2_1932
Saccharomyces paradoxus
GAACTTCTTCTTTTAAGGATTGGTATCGAGAAATGTGTGACGATTTTCTCTAACTTTGAC
0.81667
S. cerevisiae YAL002W ortholog
1_2_1404
Saccharomyces cerevisiae
YAL002W
CAATGACATGGTTGCATCAGTTGGAGAAGCAGAATTGGTAAGTAGGCAATATGTTATTGA
0.78333
2_2_1404
Saccharomyces paradoxus
AATGATATGGTTACGTCAGCTGAAGGGCCTGAATCGATCAGTAGGCAATATGTTACTGAC
0.78333
S. cerevisiae YAL002W ortholog
1_6_545
Saccharomyces cerevisiae
YAL007C
CTTGGTTATCTATATTGATTATCATTATCATTGCCGTTATAAGTATTGCCCAAGTTCTAC
0.86667
2_6_545
Saccharomyces paradoxus
TTGGTTATCTATACTAATCATGATCATCATCGCCGTTATAAGTATCGCCCAAGTCCTACT
0.86667
S. cerevisiae YAL007C ortholog
1_6_375
Saccharomyces cerevisiae
YAL007C
AACTTTGACTGACGAGCATGAAGCTGATGTCAATAACGATGACATTATTGCCAATAACGC
0.88333
2_6_375
Saccharomyces paradoxus
TTTGACTGACGAACCTGAAGCTGATGTTAATAGTGATGATATTATCGCCAATAACGCCGT
0.88333
S. cerevisiae YAL007C ortholog
Total number of rows: 33648 Table truncated, full table size 4083 Kbytes .
Supplementary data files not provided