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Platform GPL88 Query DataSets for GPL88
Status Public on Mar 11, 2002
Title [RN_U34] Affymetrix Rat Neurobiology U34 Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Rattus norvegicus
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site

Has 1322 entries and was indexed 29-Jan-2002.
Sequences were selected based on their known relevance to the field of neurobiology.
Contains probes for >1,200 mRNA sequences selected from Build 34 of the UniGene database.

 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 21, 2012: annotation table updated with netaffx build 32
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=rnu34
http://www.affymetrix.com/analysis/index.affx
Submission date Feb 19, 2002
Last update date Jun 21, 2012
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (239) GSM13332, GSM13333, GSM13334, GSM13335, GSM13336, GSM13337 
Series (7)
GSE856 12hr, 1d, 3d, and 5d exposure of beta-amyloid to astrocytes
GSE3016 Gene expression evidence for remodeling of lateral hypothalamic circuitry in cocaine addiction
GSE4242 devellis-5U24NS043562-02

Data table header descriptions
ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
SPOT_ID identifies controls
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID GB_ACC SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
A03913cds_s_at A03913 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank A03913cds R.norvegicus mRNA for glia-derived neurite-promoting factor (GdNPF) A03913 serine (or cysteine) peptidase inhibitor, clade E, member 2 Serpine2 29366 NM_019197 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from expression pattern /// 0007596 // blood coagulation // not recorded /// 0007596 // blood coagulation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0009611 // response to wounding // inferred from electronic annotation /// 0009611 // response to wounding // not recorded /// 0010466 // negative regulation of peptidase activity // not recorded /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010544 // negative regulation of platelet activation // inferred from electronic annotation /// 0010544 // negative regulation of platelet activation // not recorded /// 0010757 // negative regulation of plasminogen activation // inferred from electronic annotation /// 0010757 // negative regulation of plasminogen activation // not recorded /// 0010766 // negative regulation of sodium ion transport // inferred from electronic annotation /// 0010766 // negative regulation of sodium ion transport // not recorded /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // not recorded /// 0021683 // cerebellar granular layer morphogenesis // inferred from electronic annotation /// 0021683 // cerebellar granular layer morphogenesis // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030195 // negative regulation of blood coagulation // inferred from direct assay /// 0030195 // negative regulation of blood coagulation // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0032940 // secretion by cell // inferred from electronic annotation /// 0032940 // secretion by cell // not recorded /// 0032940 // secretion by cell // inferred from direct assay /// 0033363 // secretory granule organization // inferred from direct assay /// 0033363 // secretory granule organization // not recorded /// 0033363 // secretory granule organization // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // not recorded /// 0042177 // negative regulation of protein catabolic process // inferred from direct assay /// 0042628 // mating plug formation // inferred from electronic annotation /// 0042628 // mating plug formation // not recorded /// 0045861 // negative regulation of proteolysis // inferred from direct assay /// 0045861 // negative regulation of proteolysis // not recorded /// 0045879 // negative regulation of smoothened signaling pathway // inferred from electronic annotation /// 0045879 // negative regulation of smoothened signaling pathway // not recorded /// 0048505 // regulation of timing of cell differentiation // inferred from electronic annotation /// 0048505 // regulation of timing of cell differentiation // not recorded /// 0048711 // positive regulation of astrocyte differentiation // not recorded /// 0050974 // detection of mechanical stimulus involved in sensory perception // inferred from electronic annotation /// 0050974 // detection of mechanical stimulus involved in sensory perception // not recorded /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0051966 // regulation of synaptic transmission, glutamatergic // not recorded /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // not recorded /// 0060384 // innervation // inferred from electronic annotation /// 0060384 // innervation // not recorded /// 0061108 // seminal vesicle epithelium development // inferred from electronic annotation /// 0061108 // seminal vesicle epithelium development // not recorded /// 0061110 // dense core granule biogenesis // inferred from direct assay /// 0090331 // negative regulation of platelet aggregation // inferred from electronic annotation /// 0090331 // negative regulation of platelet aggregation // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031091 // platelet alpha granule // not recorded /// 0031232 // extrinsic to external side of plasma membrane // not recorded /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0044421 // extracellular region part // not recorded /// 0044421 // extracellular region part // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0004867 // serine-type endopeptidase inhibitor activity // traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005539 // glycosaminoglycan binding // not recorded /// 0008201 // heparin binding // inferred from direct assay /// 0008201 // heparin binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation
A17753cds_s_at A17753 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank A17753cds R.norvegicus DNA for dopaminergic receptor D-3 A17753 dopamine receptor D3 Drd3 29238 NM_017140 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001963 // synaptic transmission, dopaminergic // inferred from mutant phenotype /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0002016 // regulation of blood volume by renin-angiotensin // inferred from electronic annotation /// 0002016 // regulation of blood volume by renin-angiotensin // not recorded /// 0002031 // G-protein coupled receptor internalization // inferred from direct assay /// 0002031 // G-protein coupled receptor internalization // not recorded /// 0002031 // G-protein coupled receptor internalization // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007194 // negative regulation of adenylate cyclase activity // inferred from direct assay /// 0007194 // negative regulation of adenylate cyclase activity // not recorded /// 0007194 // negative regulation of adenylate cyclase activity // inferred from electronic annotation /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007212 // dopamine receptor signaling pathway // inferred from mutant phenotype /// 0007212 // dopamine receptor signaling pathway // traceable author statement /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0014059 // regulation of dopamine secretion // inferred from electronic annotation /// 0014059 // regulation of dopamine secretion // not recorded /// 0019216 // regulation of lipid metabolic process // inferred from electronic annotation /// 0019216 // regulation of lipid metabolic process // not recorded /// 0030814 // regulation of cAMP metabolic process // inferred from direct assay /// 0030814 // regulation of cAMP metabolic process // not recorded /// 0030814 // regulation of cAMP metabolic process // inferred from electronic annotation /// 0032416 // negative regulation of sodium:hydrogen antiporter activity // inferred from mutant phenotype /// 0032922 // circadian regulation of gene expression // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // not recorded /// 0034776 // response to histamine // inferred from electronic annotation /// 0034776 // response to histamine // not recorded /// 0040012 // regulation of locomotion // inferred from mutant phenotype /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042220 // response to cocaine // not recorded /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay /// 0042493 // response to drug // traceable author statement /// 0043278 // response to morphine // inferred from electronic annotation /// 0043278 // response to morphine // not recorded /// 0045187 // regulation of circadian sleep/wake cycle, sleep // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045471 // response to ethanol // not recorded /// 0045776 // negative regulation of blood pressure // inferred from electronic annotation /// 0045776 // negative regulation of blood pressure // not recorded /// 0045840 // positive regulation of mitosis // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046717 // acid secretion // inferred from direct assay /// 0048148 // behavioral response to cocaine // inferred from electronic annotation /// 0048148 // behavioral response to cocaine // not recorded /// 0048715 // negative regulation of oligodendrocyte differentiation // inferred from electronic annotation /// 0048715 // negative regulation of oligodendrocyte differentiation // not recorded /// 0050482 // arachidonic acid secretion // inferred from electronic annotation /// 0050482 // arachidonic acid secretion // not recorded /// 0050709 // negative regulation of protein secretion // inferred from electronic annotation /// 0050709 // negative regulation of protein secretion // not recorded /// 0050883 // musculoskeletal movement, spinal reflex action // inferred from electronic annotation /// 0050883 // musculoskeletal movement, spinal reflex action // not recorded /// 0051898 // negative regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051898 // negative regulation of protein kinase B signaling cascade // not recorded /// 0060134 // prepulse inhibition // inferred from electronic annotation /// 0060134 // prepulse inhibition // not recorded /// 0060160 // negative regulation of dopamine receptor signaling pathway // inferred from electronic annotation /// 0060160 // negative regulation of dopamine receptor signaling pathway // not recorded /// 0060161 // positive regulation of dopamine receptor signaling pathway // inferred from electronic annotation /// 0060161 // positive regulation of dopamine receptor signaling pathway // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay 0001591 // dopamine receptor activity, coupled via Gi/Go // inferred from direct assay /// 0001592 // dopamine D3 receptor activity // inferred from electronic annotation /// 0001592 // dopamine D3 receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004952 // dopamine receptor activity // inferred from mutant phenotype /// 0004952 // dopamine receptor activity // traceable author statement /// 0004952 // dopamine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008144 // drug binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0035240 // dopamine binding // inferred from mutant phenotype
AA848563_s_at AA848563 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AA848563 EST191323 Rattus norvegicus cDNA, 5' end /clone=RLUAC08 /clone_end=5' /gb=AA848563 /gi=2936103 /ug=Rn.1950 /len=467 AA848563 heat shock 70kD protein 1A /// heat shock 70kD protein 1B (mapped) Hspa1a /// Hspa1b 24472 294254 NM_031971 /// NM_212504 0000723 // telomere maintenance // not recorded /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0006281 // DNA repair // not recorded /// 0006402 // mRNA catabolic process // not recorded /// 0006402 // mRNA catabolic process // inferred from sequence or structural similarity /// 0006916 // anti-apoptosis // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006952 // defense response // inferred from direct assay /// 0006986 // response to unfolded protein // inferred from mutant phenotype /// 0006986 // response to unfolded protein // not recorded /// 0006986 // response to unfolded protein // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0009408 // response to heat // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0033033 // negative regulation of myeloid cell apoptosis // inferred from direct assay /// 0042026 // protein refolding // not recorded /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043154 // negative regulation of caspase activity // inferred from direct assay /// 0043154 // negative regulation of caspase activity // not recorded /// 0045906 // negative regulation of vasoconstriction // inferred from mutant phenotype /// 0090084 // negative regulation of inclusion body assembly // not recorded 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0016234 // inclusion body // not recorded /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0044444 // cytoplasmic part // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0002020 // protease binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0044183 // protein binding involved in protein folding // not recorded /// 0047485 // protein N-terminus binding // not recorded /// 0051059 // NF-kappaB binding // inferred from physical interaction
AA851136_g_at AA851136 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AA851136 EST193904 Rattus norvegicus cDNA, 5' end /clone=RPLAA95 /clone_end=5' /gb=AA851136 /gi=2938676 /ug=Rn.9149 /len=439 AA851136 p21 protein (Cdc42/Rac)-activated kinase 1 Pak1 29431 NM_017198 0000165 // MAPKKK cascade // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // not recorded /// 0010033 // response to organic substance // inferred from direct assay /// 0016310 // phosphorylation // not recorded /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0032956 // regulation of actin cytoskeleton organization // inferred from mutant phenotype /// 0033554 // cellular response to stress // inferred from direct assay /// 0043113 // receptor clustering // inferred from electronic annotation /// 0043113 // receptor clustering // not recorded /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0043507 // positive regulation of JUN kinase activity // inferred from sequence or structural similarity /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0014704 // intercalated disc // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0031965 // nuclear membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004709 // MAP kinase kinase kinase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction
AA944099_s_at AA944099 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AA944099 EST199598 Rattus norvegicus cDNA, 5' end /clone=REMAB18 /clone_end=5' /gb=AA944099 /gi=3104015 /ug=Rn.4215 /len=388 AA944099 platelet derived growth factor receptor, alpha polypeptide Pdgfra 25267 NM_012802 0001553 // luteinization // inferred from electronic annotation /// 0001553 // luteinization // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0008210 // estrogen metabolic process // inferred from electronic annotation /// 0008210 // estrogen metabolic process // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008585 // female gonad development // not recorded /// 0008585 // female gonad development // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // not recorded /// 0009653 // anatomical structure morphogenesis // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0030325 // adrenal gland development // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030539 // male genitalia development // inferred from electronic annotation /// 0030539 // male genitalia development // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0033327 // Leydig cell differentiation // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042063 // gliogenesis // inferred from expression pattern /// 0042063 // gliogenesis // non-traceable author statement /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0048839 // inner ear development // inferred from expression pattern /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0060325 // face morphogenesis // not recorded 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005018 // platelet-derived growth factor alpha-receptor activity // inferred from direct assay /// 0005018 // platelet-derived growth factor alpha-receptor activity // not recorded /// 0005018 // platelet-derived growth factor alpha-receptor activity // traceable author statement /// 0005018 // platelet-derived growth factor alpha-receptor activity // inferred from electronic annotation /// 0005021 // vascular endothelial growth factor receptor activity // inferred from electronic annotation /// 0005021 // vascular endothelial growth factor receptor activity // not recorded /// 0005161 // platelet-derived growth factor receptor binding // inferred from electronic annotation /// 0005161 // platelet-derived growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0046983 // protein dimerization activity // non-traceable author statement /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded
AB002801_at AB002801 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB002801 Rattus norvegicus mRNA for cyclic nucleotide-gated channel, complete cds /cds=(13,1848) /gb=AB002801 /gi=2780733 /ug=Rn.10886 /len=2213 AB002801 cyclic nucleotide gated channel alpha 3 Cnga3 85257 NM_053495 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0031960 // response to corticosteroid stimulus // inferred from expression pattern /// 0032026 // response to magnesium ion // inferred from direct assay /// 0034220 // ion transmembrane transport // not recorded /// 0051591 // response to cAMP // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0001750 // photoreceptor outer segment // not recorded /// 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // non-traceable author statement /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005221 // intracellular cyclic nucleotide activated cation channel activity // inferred from direct assay /// 0005221 // intracellular cyclic nucleotide activated cation channel activity // not recorded /// 0005221 // intracellular cyclic nucleotide activated cation channel activity // inferred from electronic annotation /// 0005223 // intracellular cGMP activated cation channel activity // non-traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030553 // cGMP binding // non-traceable author statement
AB003991_at AB003991 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB003991 rat mRNA for SNAP-25A, complete cds AB003991 synaptosomal-associated protein 25 Snap25 25012 NM_030991 0006887 // exocytosis // traceable author statement /// 0007269 // neurotransmitter secretion // not recorded /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from expression pattern /// 0007616 // long-term memory // inferred from mutant phenotype /// 0016197 // endosome transport // inferred from direct assay /// 0030252 // growth hormone secretion // inferred from expression pattern /// 0030431 // sleep // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // inferred from expression pattern /// 0046887 // positive regulation of hormone secretion // inferred from mutant phenotype /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // inferred from direct assay /// 0051963 // regulation of synaptogenesis // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0031201 // SNARE complex // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0070032 // synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex // inferred from direct assay /// 0070044 // synaptobrevin 2-SNAP-25-syntaxin-1a complex // inferred from direct assay 0000149 // SNARE binding // inferred from direct assay /// 0000149 // SNARE binding // not recorded /// 0000149 // SNARE binding // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005484 // SNAP receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from physical interaction /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0017075 // syntaxin-1 binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction
AB003991_g_at AB003991 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB003991 rat mRNA for SNAP-25A, complete cds AB003991 synaptosomal-associated protein 25 Snap25 25012 NM_030991 0006887 // exocytosis // traceable author statement /// 0007269 // neurotransmitter secretion // not recorded /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from expression pattern /// 0007616 // long-term memory // inferred from mutant phenotype /// 0016197 // endosome transport // inferred from direct assay /// 0030252 // growth hormone secretion // inferred from expression pattern /// 0030431 // sleep // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // inferred from expression pattern /// 0046887 // positive regulation of hormone secretion // inferred from mutant phenotype /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // inferred from direct assay /// 0051963 // regulation of synaptogenesis // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0031201 // SNARE complex // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0070032 // synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex // inferred from direct assay /// 0070044 // synaptobrevin 2-SNAP-25-syntaxin-1a complex // inferred from direct assay 0000149 // SNARE binding // inferred from direct assay /// 0000149 // SNARE binding // not recorded /// 0000149 // SNARE binding // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005484 // SNAP receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from physical interaction /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0017075 // syntaxin-1 binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction
AB003992_s_at AB003992 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB003992 Rat mRNA for SNAP-25B, complete cds AB003992 synaptosomal-associated protein 25 Snap25 25012 NM_030991 0006887 // exocytosis // traceable author statement /// 0007269 // neurotransmitter secretion // not recorded /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from expression pattern /// 0007616 // long-term memory // inferred from mutant phenotype /// 0016197 // endosome transport // inferred from direct assay /// 0030252 // growth hormone secretion // inferred from expression pattern /// 0030431 // sleep // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // inferred from expression pattern /// 0046887 // positive regulation of hormone secretion // inferred from mutant phenotype /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // inferred from direct assay /// 0051963 // regulation of synaptogenesis // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0031201 // SNARE complex // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0070032 // synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex // inferred from direct assay /// 0070044 // synaptobrevin 2-SNAP-25-syntaxin-1a complex // inferred from direct assay 0000149 // SNARE binding // inferred from direct assay /// 0000149 // SNARE binding // not recorded /// 0000149 // SNARE binding // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005484 // SNAP receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from physical interaction /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0017075 // syntaxin-1 binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction
AB004267_at AB004267 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB004267 Rattus norvegicus mRNA for Ca2+/calmodulin-dependent protein kinase I beta 2, complete cds /cds=(214,1245) /gb=AB004267 /gi=3135196 /ug=Rn.11178 /len=1618 AB004267 pregnancy upregulated non-ubiquitously expressed CaM kinase Pnck 29660 NM_017275 0006468 // protein phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation
AB004267_g_at AB004267 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB004267 Rattus norvegicus mRNA for Ca2+/calmodulin-dependent protein kinase I beta 2, complete cds /cds=(214,1245) /gb=AB004267 /gi=3135196 /ug=Rn.11178 /len=1618 AB004267 pregnancy upregulated non-ubiquitously expressed CaM kinase Pnck 29660 NM_017275 0006468 // protein phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation
AB004638_at AB004638 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB004638 Rattus norvegicus mRNA for fibroblast growth factor (FGF-18), complete cds AB004638 fibroblast growth factor 18 Fgf18 29369 NM_019199 0001503 // ossification // not recorded /// 0001525 // angiogenesis // not recorded /// 0001957 // intramembranous ossification // not recorded /// 0001958 // endochondral ossification // not recorded /// 0002063 // chondrocyte development // not recorded /// 0007399 // nervous system development // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0030324 // lung development // not recorded /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0032332 // positive regulation of chondrocyte differentiation // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005730 // nucleolus // not recorded 0005104 // fibroblast growth factor receptor binding // non-traceable author statement /// 0005105 // type 1 fibroblast growth factor receptor binding // not recorded /// 0005111 // type 2 fibroblast growth factor receptor binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation
AB008682_at AB008682 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB008682 Rattus norvegicus mRNA for FGF-17, complete cds AB008682 fibroblast growth factor 17 Fgf17 29368 NM_019198 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005105 // type 1 fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005105 // type 1 fibroblast growth factor receptor binding // not recorded /// 0005111 // type 2 fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005111 // type 2 fibroblast growth factor receptor binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation
AB008752_at AB008752 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB008752 Rattus norvegicus mRNA for delta-catenin, partial cds AB008752 catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein) Ctnnd2 114028 XM_001064375 /// XM_001065606 0001763 // morphogenesis of a branching structure // inferred from electronic annotation /// 0001763 // morphogenesis of a branching structure // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation
AB010275_s_at AB010275 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB010275 Rattus norvegicus mRNA for leukemia inhibitory factor, complete cds AB010275 leukemia inhibitory factor Lif 60584 NM_022196 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007566 // embryo implantation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0019827 // stem cell maintenance // not recorded /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0031100 // organ regeneration // inferred from mutant phenotype /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0042503 // tyrosine phosphorylation of Stat3 protein // not recorded /// 0042503 // tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded /// 0045651 // positive regulation of macrophage differentiation // inferred from electronic annotation /// 0045651 // positive regulation of macrophage differentiation // not recorded /// 0045835 // negative regulation of meiosis // inferred from electronic annotation /// 0045835 // negative regulation of meiosis // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046697 // decidualization // inferred from electronic annotation /// 0046697 // decidualization // not recorded /// 0046888 // negative regulation of hormone secretion // inferred from electronic annotation /// 0046888 // negative regulation of hormone secretion // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048644 // muscle organ morphogenesis // inferred from electronic annotation /// 0048644 // muscle organ morphogenesis // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0048708 // astrocyte differentiation // inferred from mutant phenotype /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // not recorded /// 0048861 // leukemia inhibitory factor signaling pathway // inferred from electronic annotation /// 0048861 // leukemia inhibitory factor signaling pathway // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0051461 // positive regulation of adrenocorticotropin secretion // inferred from direct assay /// 0060041 // retina development in camera-type eye // inferred from direct assay /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation /// 0060135 // maternal process involved in female pregnancy // not recorded /// 0060290 // transdifferentiation // inferred from mutant phenotype /// 0060426 // lung vasculature development // inferred from electronic annotation /// 0060426 // lung vasculature development // not recorded /// 0060463 // lung lobe morphogenesis // inferred from electronic annotation /// 0060463 // lung lobe morphogenesis // not recorded /// 0060707 // trophoblast giant cell differentiation // inferred from electronic annotation /// 0060707 // trophoblast giant cell differentiation // not recorded /// 0060708 // spongiotrophoblast differentiation // inferred from electronic annotation /// 0060708 // spongiotrophoblast differentiation // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070373 // negative regulation of ERK1 and ERK2 cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005146 // leukemia inhibitory factor receptor binding // inferred from mutant phenotype /// 0005146 // leukemia inhibitory factor receptor binding // not recorded /// 0005146 // leukemia inhibitory factor receptor binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded
AB010963_s_at AB010963 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB010963 Rattus norvegicus mRNA for calcium activated potassium channel beta subunit spliced variant, complete cds AB010963 potassium large conductance calcium-activated channel, subfamily M, beta member 1 Kcnmb1 29747 NM_019273 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0051592 // response to calcium ion // inferred from direct assay 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0015269 // calcium-activated potassium channel activity // not recorded /// 0015269 // calcium-activated potassium channel activity // traceable author statement /// 0015269 // calcium-activated potassium channel activity // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // inferred from direct assay
AB011679_at AB011679 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB011679 Rattus norvegicus mRNA for class I beta-tubulin, complete cds AB011679 tubulin, beta 5 Tubb5 29214 NM_173102 0001764 // neuron migration // inferred from electronic annotation /// 0007017 // microtubule-based process // not recorded /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007067 // mitosis // inferred from mutant phenotype /// 0007411 // axon guidance // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051225 // spindle assembly // not recorded /// 0051258 // protein polymerization // inferred from electronic annotation /// 0070914 // UV-damage excision repair // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004980 // melanocyte-stimulating hormone receptor activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // not recorded /// 0005200 // structural constituent of cytoskeleton // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0042277 // peptide binding // inferred from physical interaction /// 0042288 // MHC class I protein binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // not recorded
AB013130_at AB013130 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB013130 Rattus norvegicus mRNA for synaptopodin, complete cds AB013130 synaptopodin Synpo 60324 NM_021695 0032233 // positive regulation of actin filament bundle assembly // not recorded /// 0051492 // regulation of stress fiber assembly // not recorded 0001725 // stress fiber // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded
AB013890_at AB013890 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB013890 Rattus norvegicus mRNA for inward rectifier potassium channel Kir 1.4, complete cds /cds=(125,1207) /gb=AB013890 /gi=3138790 /ug=Rn.14516 /len=2018 AB013890 potassium inwardly-rectifying channel, subfamily J, member 13 Kcnj13 94341 NM_053608 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation
AB015946_s_at AB015946 Rattus norvegicus Jun 9, 2011 Exemplar sequence GenBank AB015946 Rattus norvegicus mRNA for tubulin, complete cds AB015946 tubulin, gamma 1 Tubg1 252921 NM_145778 0000212 // meiotic spindle organization // not recorded /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007020 // microtubule nucleation // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation 0000242 // pericentriolar material // inferred from electronic annotation /// 0000242 // pericentriolar material // not recorded /// 0000794 // condensed nuclear chromosome // not recorded /// 0000930 // gamma-tubulin complex // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005813 // centrosome // inferred from electronic annotation /// 0005814 // centriole // inferred from electronic annotation /// 0005814 // centriole // not recorded /// 0005815 // microtubule organizing center // traceable author statement /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005827 // polar microtubule // not recorded /// 0005827 // polar microtubule // inferred from sequence or structural similarity /// 0005827 // polar microtubule // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // not recorded /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation

Total number of rows: 1322

Table truncated, full table size 4213 Kbytes.






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