|
| Status |
Public on Mar 14, 2008 |
| Title |
Transcription Factor Substitution during the Evolution of Fungal Ribosome Regulation |
| Organism |
Candida albicans |
| Experiment type |
Expression profiling by array
Genome binding/occupancy profiling by genome tiling array
|
| Summary |
Coordinated ribosomal protein (RP) gene expression is crucial for cellular viability, but the transcriptional network controlling this regulon has only been well characterized in the yeast Saccharomyces cerevisiae. We have used whole-genome transcriptional and location profiling to establish that, in Candida albicans, the RP regulon is controlled by the Myb-domain protein Tbf1 working in conjunction with Cbf1. These two factors bind both the promoters of RP genes and the rDNA locus; Tbf1 activates transcription at these loci and is essential. Orthologs of Tbf1 bind TTAGGG telomeric repeats in most eukaryotes, and TTAGGG cis-elements are present upstream of RP genes in plants and fungi, suggesting that Tbf1 was involved in both functions in ancestral eukaryotes. In all Hemiascomycetes, Rap1 substituted Tbf1 at telomeres and in the S. cerevisiae lineage this substitution also occurred independently at RP genes, illustrating the extreme adaptability and flexibility of transcriptional regulatory networks.
This SuperSeries is composed of the SubSeries listed below.
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| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
18342603 |
| |
| Submission date |
Feb 23, 2008 |
| Last update date |
Dec 28, 2012 |
| Contact name |
Hugo Lavoie |
| E-mail(s) |
hugo.lavoie@nrc-cnrc.gc.ca
|
| Phone |
514-496-6154
|
| Fax |
514-496-6213
|
| Organization name |
CNRC-IRB
|
| Department |
Genetics
|
| Street address |
6100 Royalmount
|
| City |
Montreal |
| State/province |
Quebec |
| ZIP/Postal code |
H4P 2R2 |
| Country |
Canada |
| |
|
| Platforms (2) |
| GPL6474 |
Candida albicans ChIP-CHIP array |
| GPL6475 |
Candida albicans expression array |
|
| Samples (16)
|
| GSM264707 |
ChIP-CHIP of Cbf1-HA replicate 2 |
| GSM265362 |
tetO-TBF1/tbf1 vs TBF1/tbf1 profiling 3h-tetracycline replicate 1 |
| GSM265364 |
tetO-TBF1/tbf1 untreated vs tetO-TBF1/tbf1 with 3h-tetracycline |
| GSM265365 |
tetO-TBF1/tbf1 vs TBF1/tbf1 profiling 0h-tetracycline |
| GSM265367 |
tetO-TBF1/tbf1 vs TBF1/tbf1 profiling 3h-tetracycline replicate 2 |
| GSM265368 |
tetO-TBF1/tbf1 vs TBF1/tbf1 profiling 5h-tetracycline replicate 1 |
| GSM265370 |
tetO-TBF1/tbf1 vs TBF1/tbf1 profiling 1h-tetracycline |
| GSM265373 |
tetO-TBF1/tbf1 with 3h-tetracycline vs tetO-TBF1/tbf1 untreated |
| GSM265375 |
tetO-TBF1/tbf1 with 5h-tetracycline vs tetO-TBF1/tbf1 untreated replicate 1 |
| GSM265376 |
tetO-TBF1/tbf1 with 5h-tetracycline vs tetO-TBF1/tbf1 untreated replicate 2 |
| GSM265377 |
TBF1/tbf1 with 5h-tetracycline vs TBF1/tbf1 untreated |
| GSM265378 |
tetO-TBF1/tbf1 vs TBF1/tbf1 profiling 5h-tetracycline replicate 2 |
| GSM265379 |
tetO-TBF1/tbf1 with 1h-tetracycline vs tetO-TBF1/tbf1 untreated |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE10458 |
Transcription Factor Substitution during the Evolution of Fungal Ribosome Regulation_ChIP-CHIP |
| GSE10499 |
Transcription Factor Substitution during the Evolution of Fungal Ribosome Regulation_expression profiling |
|
| Relations |
| BioProject |
PRJNA107683 |
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