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| Status |
Public on Apr 02, 2022 |
| Title |
Transcriptomic analyses of co-treatment of AFB1 and curcumin in chicken liver |
| Organism |
Gallus gallus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Purpose:In order to assess the toxicity of AFB1 in chicken liver and the mechanism of curcumin alleviating AFB1-induced liver toxicity in chicken, we established a co-administered model to investigate LncRNA and mRNA profiles of chicken liver.
Methods: RNA extracted by Total RNA Extractor (Trizol) was utilized to construct the final library. Libraries were pooled and sequenced on a 150-bp paired-end Illumina HiSeq™ 2000 run. The sequencing data obtained from Illumina Hiseq™ was filtered to get clean reads using Trimmomatic. The reads themselves and their matching reads which length was less than 35nt were removed. Clean reads were aligned to the reference sequence (Gallus_gallus-5.0, NCBI) using HISAT2.
Results: Sampling directly from the liver yielded sufficient quantities of RNA to assess transcripts from each chicken and mapped to 24,883 Gallus gallus genes.
Conclusions: We used the method of RNA-seq to find the target genes and related signaling pathways involved in the co-administered (AFB1 and curcumin) and their underlying mechanisms.
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| Overall design |
RNA-seq of livers from chickens treated with AFB1, or AFB1 and curcumin or no treatment control.
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| Contributor(s) |
Zhang X, Li S, Liu R, Yu H |
| Citation(s) |
33396056 |
| |
| Submission date |
Apr 02, 2020 |
| Last update date |
Jul 03, 2022 |
| Contact name |
Sihong Li |
| E-mail(s) |
lisihong@neau.edu.cn
|
| Organization name |
Northeast Agricultural University
|
| Street address |
600 Changjiang Road
|
| City |
Harbin |
| ZIP/Postal code |
150000 |
| Country |
China |
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| Platforms (1) |
| GPL16133 |
Illumina HiSeq 2000 (Gallus gallus) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA622813 |
| SRA |
SRP255068 |
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