|
| Status |
Public on Mar 19, 2021 |
| Title |
Secreted milk transcriptome from early lactation dairy cows |
| Organism |
Bos taurus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Our objective was to characterize the protein coding portion of the bovine mammary gland transcriptome by magnitude of RNA-seq read counts. EBseq analysis determined no differentially expressed genes due to postruminal lysine infusion, therefore, read counts were averaged across treatment and block. DAVID functional annotation analysis was utilized to determine specific gene ontologies and KEGG pathways to describe the data by magnitude of reads.
|
| |
|
| Overall design |
Six Holstein cows' milk RNA sequenced to determine effects of postruminal lysine treatment on mammary transcriptome profile.
|
| |
|
| Contributor(s) |
Beckett L, Donkin S, Casey T, Thimmapuram J, Xie S |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Apr 13, 2020 |
| Last update date |
Mar 19, 2021 |
| Contact name |
Shaojun Xie |
| E-mail(s) |
xie186@purdue.edu
|
| Phone |
7657140672
|
| Organization name |
Purdue University
|
| Street address |
3135 Decatur Street
|
| City |
WEST LAFAYETTE |
| State/province |
Indiana |
| ZIP/Postal code |
47906 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL26012 |
Illumina NovaSeq 6000 (Bos taurus) |
|
| Samples (12)
|
|
| Relations |
| BioProject |
PRJNA625085 |
| SRA |
SRP256295 |
Less...
More...