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| Status |
Public on Jun 25, 2021 |
| Title |
High-resolution, genome-wide mapping of positive supercoiling in chromosomes |
| Organisms |
Saccharomyces cerevisiae; Escherichia coli str. K-12 substr. MG1655 |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
34279217 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R01 GM082899 |
Cell cycle regulation and chromosome organization in Caulobacter crescentus |
MASSACHUSETTS INSTITUTE OF TECHNOLOGY |
Michael Laub |
| K99 GM134153 |
Control of topoisomerase activity during DNA replication by bacterial chromosome structuring proteins |
MASSACHUSETTS INSTITUTE OF TECHNOLOGY |
Monica S. Guo |
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| Submission date |
Jun 19, 2020 |
| Last update date |
Aug 22, 2021 |
| Contact name |
Monica S Guo |
| E-mail(s) |
msguo@uw.edu
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| Organization name |
University of Washington
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| Department |
Microbiology
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| Lab |
Guo
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| Street address |
750 Republican St
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| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
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| Platforms (2) |
| GPL19756 |
Illumina NextSeq 500 (Saccharomyces cerevisiae) |
| GPL21117 |
Illumina NextSeq 500 (Escherichia coli str. K-12 substr. MG1655) |
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| Samples (28)
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| GSM4628309 |
ML3286 (MG1655 pKVS45-GapR-3xFLAG), in exponential phase, uninduced |
| GSM4628310 |
ML3286 (MG1655 pKVS45-GapR-3xFLAG), in exponential phase, induced with aTc |
| GSM4628311 |
ML3285 (MG1655 pKVS45-GapR) in exponential phase, induced with aTc, replicate 1 |
| GSM4628312 |
ML3285 (MG1655 pKVS45-GapR) in exponential phase, induced with aTc, replicate 2 |
| GSM4628313 |
ML3286 (MG1655 pKVS45-GapR-3xFLAG), in exponential phase, induced with aTc, replicate 1 |
| GSM4628314 |
ML3286 (MG1655 pKVS45-GapR-3xFLAG), in exponential phase, induced with aTc, replicate 2 |
| GSM4628315 |
ML3286 (MG1655 pKVS45-GapR-3xFLAG), in exponential phase, induced with aTc and treated with rifampicin |
| GSM4628316 |
ML3288 (OAY470 LEU2::-gal1/10-GapR) in glycerol and induced with galactose, replicate 1 |
| GSM4628317 |
ML3288 (OAY470 LEU2::-gal1/10-GapR) in glycerol and induced with galactose, replicate 2 |
| GSM4628318 |
ML3289 (OAY470 LEU2::-gal1/10-GapR-3xFLAG) in glycerol and induced with galactose, replicate 1 |
| GSM4628319 |
ML3289 (OAY470 LEU2::-gal1/10-GapR-3xFLAG) in glycerol and induced with galactose, replicate 2 |
| GSM4989042 |
ML3325 (MG1655 pKVS45-GapR1-76-3xFLAG), in exponential phase, induced with aTc, replicate 1 |
| GSM4989043 |
ML3325 (MG1655 pKVS45-GapR1-76-3xFLAG), in exponential phase, induced with aTc, replicate 2 |
| GSM5001899 |
ML3289 (OAY470 LEU2::-gal1/10-GapR-3xFLAG) in raffinose and induced with galactose, replicate 1 |
| GSM5001900 |
ML3289 (OAY470 LEU2::-gal1/10-GapR-3xFLAG) in raffinose and induced with galactose, replicate 2 |
| GSM5001901 |
ML3289 (OAY470 LEU2::-gal1/10-GapR-3xFLAG) in raffinose, alpha-factor arrested, and induced with galactose, replicate 1 |
| GSM5001902 |
ML3289 (OAY470 LEU2::-gal1/10-GapR-3xFLAG) in raffinose, alpha-factor arrested, and induced with galactose, replicate 2 |
| GSM5001903 |
ML3289 (OAY470 LEU2::-gal1/10-GapR-3xFLAG) in raffinose and induced with galactose, input |
| GSM5001904 |
ML3289 (OAY470 LEU2::-gal1/10-GapR-3xFLAG) in raffinose, alpha-factor arrested, and induced with galactose, input |
| GSM5001905 |
ML3288 (OAY470 LEU2::-gal1/10-GapR) in raffinose and induced with galactose |
| GSM5001906 |
ML3288 (OAY470 LEU2::-gal1/10-GapR) in raffinose, alpha-factor arrested, and induced with galactose |
| GSM5001907 |
ML3289 (OAY470 LEU2::-gal1/10-GapR-3xFLAG), in raffinose and induced with galactose, replicate 1 |
| GSM5001908 |
ML3289 (OAY470 LEU2::-gal1/10-GapR-3xFLAG), in raffinose and induced with galactose, replicate 2 |
| GSM5001909 |
ML3289 (OAY470 LEU2::-gal1/10-GapR-3xFLAG), in raffinose, alpha-factor arrested, and induced with galactose, replicate 1 |
| GSM5001910 |
ML3289 (OAY470 LEU2::-gal1/10-GapR-3xFLAG), in raffinose, alpha-factor arrested, and induced with galactose, replicate 2 |
| GSM5001911 |
ML3289 (OAY470 LEU2::-gal1/10-GapR-3xFLAG), in glycerol and induced with galactose |
| GSM5001912 |
ML3287 (OAY470), in raffinose and induced with galactose, replicate 1 |
| GSM5001913 |
ML3287 (OAY470), in raffinose and induced with galactose, replicate 2 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE152879 |
High-resolution, genome-wide mapping of positive supercoiling in chromosomes [RNA-seq] |
| GSE152880 |
High-resolution, genome-wide mapping of positive supercoiling in chromosomes [ecChIP] |
| GSE152881 |
High-resolution, genome-wide mapping of positive supercoiling in chromosomes [yChIP] |
| GSE164186 |
High-resolution, genome-wide mapping of positive supercoiling in chromosomes [RNA-Seq 2] |
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| Relations |
| BioProject |
PRJNA640686 |
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