NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE188608 Query DataSets for GSE188608
Status Public on Apr 03, 2023
Title Long-term proliferation of immature hypoxia-dependent JMML cells supported by a 3D in vitro system
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Juvenile myelomonocytic leukemia (JMML) is a rare stem cell disorder occurring in early childhood and characterized by RAS pathway hyperactivation in 95% of patients. JMML is identified by a hyperproliferation of granulocyte and monocyte, and little is known about the heterogeneous nature of leukemia initiating cells as well as the cellular hierarchy of the JMML bone marrow (BM). In this study, we reported the generation and characterization of a novel patient-derived 3D in vitro JMML model (pd-JAO) sustaining long-term proliferation of JMML cells with stem cell features and patient specific hallmarks. JMML cells brewed in the 3D model under different microenvironmental conditions acquired a proliferative and survival advantage when placed at low oxygen tensions. Transcriptomic and microscopic analysis revealed the activation of specific metabolic energy pathways and the inactivation of processes leading to cell death. Furthermore, we demonstrated pd-JAO derived cells’ migratory, propagation and self-renewal capacities both in in vitro and in vivo mouse model. Our study contributed to the development of a robust JMML 3D in vitro model to study and comprehend the impact of microenvironment stimuli on JMML disease and the molecular mechanisms regulating JMML initiating and propagating cells. Pd-JAO may become a promising model for compound tests focusing on new therapeutic intervention aiming to eradicate JMML progenitors and control JMML disease.
We defined a 3D in vitro model that under hypoxic conditions is able to sustain long-term propagation of JMML-patients cells with specific hallmarks. Different oxygen level enviroment drive specific metabolic switch that prompts JMML cells to self-renewal.
 
Overall design Gene expression was measured using Affymetrix platform in pairs of primary JMML pd-JAO derived cells maintained both in hypoxia and normoxia conditions
 
Contributor(s) Bresolin S
Citation(s) 36053787
Submission date Nov 11, 2021
Last update date May 12, 2023
Contact name silvia bresolin
E-mail(s) silvia.bresolin@unipd.it
Phone +390498215487
Organization name universitĂ  di padova
Department department of women's and children's health
Lab SSD ematologia-clinica sperimentale
Street address via giustiniani 3
City padova
State/province padova
ZIP/Postal code 35128
Country Italy
 
Platforms (1)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Samples (10)
GSM5686744 pd-JAO-dc_Hypoxia [pt#10]
GSM5686745 pd-JAO-dc_Normoxia [pt#10]
GSM5686746 pd-JAO-dc_Hypoxia [pt#12]
Relations
BioProject PRJNA779629

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE188608_RAW.tar 45.3 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap