NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE197048 Query DataSets for GSE197048
Status Public on Aug 22, 2023
Title The genome sequencing of Sitopsis species provide insights into its contribution to the B subgenome in Triticum aestivum [RNA-seq]
Organisms Triticum aestivum; Aegilops speltoides
Experiment type Expression profiling by high throughput sequencing
Summary To reveal the origin of the wheat B sub-genome, we performed the whole genome sequencing of sitopsis species. Besides, we also conducted the RNA seq of Ae.speltoides and hexaploid wheat Chinese Spring.
 
Overall design We conducted the whole genome sequencing of 5 species, whole exome sequencing of sitopsis.Besides, we also conducted the RNA-seq sequencing of 17 tissues of Ae.speltoides samples, 7 tissues of wheat.
 
Contributor(s) Yang Y
Citation(s) 36855304
Submission date Feb 19, 2022
Last update date Aug 23, 2023
Contact name Zefu Lu
E-mail(s) luzefu@live.com
Organization name Institute of Crop Sciences
Street address No.12 Zhongguancun South St.,Haidian District, Beijing, P.R.China
City Beijing
State/province Haidian
ZIP/Postal code 100081
Country China
 
Platforms (2)
GPL25409 Illumina NovaSeq 6000 (Triticum aestivum)
GPL31956 Illumina NovaSeq 6000 (Aegilops speltoides)
Samples (75)
GSM5907413 Ae.speltoides_grain_10day_Rep1
GSM5907414 Ae.speltoides_grain_10day_Rep2
GSM5907415 Ae.speltoides_grain_10day_Rep3
This SubSeries is part of SuperSeries:
GSE197593 The genome sequencing of Sitopsis species provide insights into its contribution to the B subgenome in Triticum aestivum
Relations
BioProject PRJNA808607

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE197048_RAW.tar 19.9 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap