 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on May 27, 2010 |
| Title |
Affymetrix SNP6.0 array for comparison of lung tumor and adjacent normal to high-throughput sequencing data |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by SNP array
|
| Summary |
One lung tumor and its adjacent normal were profiled for copy-number alterations with the high-resolution Affymetrix SNP6.0 Array.
The SRA ID for the high throughput sequencing project will accompany our study is SRP002045.
|
| |
|
| Overall design |
One lung tumor sample and an adjacent normal sample were assayed on the Affymetrix SNP6.0 array.
|
| |
|
| Contributor(s) |
Lee W, Zhaoshi J, Liu J, Haverty PM, Guan Y, Stinson J, Yue P, Zhang Y, Pant KP, Bhatt D, Ha C, Johnson S, Kennemer MI, Mohan S, Nazarenko I, Watanabe C, Sparks AB, Shames DS, Gentleman R, Stern H, Pandita A, Ballinger DG, Drmanac R, Modrusan Z, Seshagiri S, Zhang Z |
| Citation(s) |
20505728 |
| Submission date |
Mar 02, 2010 |
| Last update date |
Nov 27, 2018 |
| Contact name |
Peter Haverty |
| E-mail(s) |
phaverty@gene.com
|
| Organization name |
Genentech, Inc.
|
| Department |
Bioinformatics
|
| Street address |
1 DNA Way
|
| City |
South San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94080 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL6801 |
[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array |
|
| Samples (2) |
| GSM517071 |
HF-23896-(1), Affymetrix SNP6.0 array |
| GSM517072 |
HF-23897-(1), Affymetrix SNP6.0 array |
|
| This SubSeries is part of SuperSeries: |
| GSE20585 |
The mutation spectrum revealed by paired genome sequences from a lung cancer patient |
|
| Relations |
| BioProject |
PRJNA129855 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE20584_RAW.tar |
97.7 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
|
|
|
|
 |
