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Series GSE223026 Query DataSets for GSE223026
Status Public on Jan 22, 2023
Title Human CD4 cytotoxic T lymphocytes mediate potent tumor control via tumor cell HLA 2 class II expression in a humanized immune system mouse model
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Efficacy of immune checkpoint inhibitors in cancer can be limited by dysfunction of CD8 T cells or down-regulation of HLA class I. Tumor control mechanisms independent of the CD8/HLA-I axis would bypass these limitations. CD4 cytotoxic T lymphocytes (CTLs) have been detected in diverse human cancers. However, their independent roles in tumor immunity are underexplored. Here, we report CD4 T cell-dependent spontaneous tumor regression and subsequent memory responses in a humanized immune system (HIS) mouse model. HT-29 tumors, which upregulate HLA class II expression in response to IFN-γ, regressed or were eliminated in a subset of tumor implanted HIS mice. Mice with regressing tumors showed increased cytotoxic CD4 T cells in blood and tumors and enhanced HLA-II expression on tumor cells compared to mice with progressing tumors. The intratumoral CD4 T cell subset associated with tumor regression expressed multiple cytotoxic markers and exhibited clonal expansion. Notably, tumor control was abrogated by depletion of CD4 but not CD8 T cells. CD4 T cells derived from tumor-regressing mice exhibited HLA-II-dependent and tumor cell-specific killing ex vivo. Taken together, our study demonstrates a critical role of human CD4 CTLs in mediating potent tumor control independent of CD8 T cells and provides a novel platform to study human CD4 CTL-mediated anti-tumor immunity.
 
Overall design Data includes untreated same donor-engrafted StRG47 HIS mice implanted with HT-29 colon tumor. Tumor samples were collected after 1 month and sorted human CD45+ and mouse CD45+ for sequencing. There are 11 samples in total, 5 StRG47 HIS regressors and 6 StRG47 HIS progressors. The single cell data is aligned to both the human and mouse genome and the TCR data is aligned to human.
Web link https://doi.org/10.1038/s42003-023-04812-3
 
Contributor(s) Lin W, Singh V, Springer R, Choonoo G, Gupta N, Khatri A, Frleta D, Zhong J, Owczarek T, Macdonald L, Murphy A, Thurston G, Mohrs M, Ioffe E, Lu Y
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jan 17, 2023
Last update date Apr 25, 2023
Contact name Gabrielle Choonoo
Organization name Regeneron Pharmaceuticals, Inc
Street address 777 Old Saw Mill River Rd
City Tarrytown
State/province NY
ZIP/Postal code 10591
Country USA
 
Platforms (2)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
GPL25526 Illumina NovaSeq 6000 (Homo sapiens; Mus musculus)
Samples (22)
GSM6938385 StRG47-Prog-hCD45-1 (scRNA-seq)
GSM6938386 StRG47-Prog-hCD45-1 (TCR-seq)
GSM6938387 StRG47-Prog-hCD45-2 (scRNA-seq)
Relations
BioProject PRJNA924727

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE223026_All.RData.gz 724.4 Mb (ftp)(http) RDATA
GSE223026_CD4.RData.gz 120.3 Mb (ftp)(http) RDATA
GSE223026_CD4_TCR.RData.gz 334.4 Kb (ftp)(http) RDATA
GSE223026_CD8.RData.gz 176.4 Mb (ftp)(http) RDATA
GSE223026_CD8_TCR.RData.gz 114.7 Kb (ftp)(http) RDATA
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Raw data are available in SRA
Processed data are available on Series record

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