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| Status |
Public on Jul 29, 2024 |
| Title |
Upstream regulator of genomic imprinting in rice is a small RNA-associated chromatin remodeler [RNA-seq] |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Knock down of CLSY3 in rice caused endosperm development defects. We investigated the molecular effects of loss of CLSY3 in rice endosperm by profiling sRNA and mRNA transcriptomes .These analyses revealed the roles of CLSY3 in Endosperm development.
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| Overall design |
We performed RNA seq analyses to look at the expression of the genes in WT and clsy3 kd at 20 days after anthesis. We performed RNAseq analyses to look at the expression of the genes in embryo and endosperm 25days days after anthesis.
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| Contributor(s) |
Shivaprasad PV, Pal AK |
| Citation(s) |
39242590 |
| |
| Submission date |
Apr 18, 2023 |
| Last update date |
Oct 08, 2024 |
| Contact name |
Shivaprasad Padubidri V. |
| E-mail(s) |
shivaprasad@ncbs.res.in, epigeneticsncbsindia@gmail.com, harshith200cy@gmail.com
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| Phone |
+91-80-2366-6511
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| Organization name |
National Centre for Biological Sciences - TIFR
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| Street address |
UAS-GKVK Campus
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| City |
Bangalore |
| ZIP/Postal code |
560065 |
| Country |
India |
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| Platforms (1) |
| GPL19290 |
Illumina HiSeq 2500 (Oryza sativa) |
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| Samples (10)
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| This SubSeries is part of SuperSeries: |
| GSE229961 |
Upstream regulator of genomic imprinting in rice is a small RNA-associated chromatin remodeler |
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| Relations |
| BioProject |
PRJNA956897 |
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