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Series GSE232953 Query DataSets for GSE232953
Status Public on May 24, 2024
Title Small-molecule-induced epigenetic rejuvenation overcomes myelinogenic barriers and stimulates myelin repair [Cut&Run]
Organism Rattus norvegicus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Failure of oligodendrocytes to remyelinate underlies diseases such as multiple sclerosis (MS). We found that epigenetic silencing prevents oligodendrocytes from producing myelin sheaths in demyelinating MS lesions. Here, we developed a transgenic reporter system to identify a small-molecule epigenetic modulator that stimulates oligodendrocyte maturation and myelin ensheathment in vitro. This compound promoted remyelination in animal models of MS and myelination of regenerated axons and increased myelin sheath lengths in human iPSC-derived organoids. Multi-omics analyses revealed that the compound induced an enhancer/super-enhancer landscape that upregulates crucial myelinogenesis-associated pathways, including RRAS2-AKT signaling, driving actin depolymerization necessary for myelin ensheathment. Strikingly, the compound also induced phase-separated nuclear condensates of SREBP1/2, which concentrate transcriptional co-activators to drive lipid and cholesterol biosynthesis. Silencing expression of a potential target of the small molecule, HDAC3, facilitated robust myelination and remyelination. Our findings suggest that small-molecule-modulated epigenome rejuvenation relieves epigenetic silencing barriers and promotes myelin repair.
 
Overall design cut and run of treated rat iOLs with indicated antibody
 
Contributor(s) Liu X, He X, Lu QR
Citation(s) 38701782
Submission date May 19, 2023
Last update date May 24, 2024
Contact name XUEZHAO LIU
E-mail(s) xuezhao.liu@cchmc.org
Organization name cincinnati children's hospital medical center
Street address 3333 Burnet Ave. MLC 7013, T6.525
City cincinnati
State/province OH
ZIP/Postal code 45229
Country USA
 
Platforms (1)
GPL25029 NextSeq 550 (Rattus norvegicus)
Samples (8)
GSM7398487 DMSO_H3K27AC
GSM7398488 26C_H3K27AC
GSM7398489 DMSO_H3K27me3
This SubSeries is part of SuperSeries:
GSE232956 Small-molecule-induced epigenetic rejuvenation overcomes myelinogenic barriers and stimulates myelin repair
Relations
BioProject PRJNA974476

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Supplementary file Size Download File type/resource
GSE232953_RAW.tar 698.6 Mb (http)(custom) TAR (of BW, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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