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Series GSE254781 Query DataSets for GSE254781
Status Public on Jul 23, 2024
Title Administration of anti-HIV-1 broadly neutralizing monoclonal antibodies with increased binding affinity to Fcg receptors during acute SHIV infection shapes innate and adaptive cellular immunity [set1]
Organism Macaca mulatta
Experiment type Expression profiling by high throughput sequencing
Summary Anti-HIV-1 broadly neutralizing antibodies (bNAbs) have the dual potential of mediating virus neutralization and antiviral effector functions through their Fab and Fc domains, respectively. So far, bNAbs with enhanced Fc effector functions in vitro have only been tested in NHPs during chronic simian-HIV (SHIV) infection. Here, we investigated the effects of administering in acute SHIVAD8-EO infection either wild-type (WT) bNAbs or bNAbs carrying the S239D/I332E/A330L (DEL) mutation, which increases binding to FcgRs. Emergence of plasma and lymph node (LN) virus was delayed in bNAb-treated monkeys and occurred earlier in monkeys given DEL bNAbs than in those given WT bNAbs, consistent with faster clearance of DEL bNAbs from plasma. DEL bNAb-treated monkeys had higher levels of circulating virus-specific IFNg single-producing and IFNg/MIP-1b double-producing CD8+ CD69+ T cells than the other groups. In LNs, WT bNAbs were evenly distributed between follicular and extrafollicular areas, but DEL bNAbs predominated in the latter. At week 8 post-challenge, LN monocytes and NK cells from DEL bNAb-treated monkeys upregulated proinflammatory signaling pathways and LN T cells downregulated TNF signaling via NF-kB. Overall, bNAbs with increased binding affinity to FcgRs shaped innate and adaptive cellular immunity, which may be important to consider in future strategies of passive bNAb therapy.
 
Overall design Bulk mRNA-Seq of 175 samples collected from 17 rhesus macaques infected with simian-HIV and then treated with a wild-type broadly neutralizing antibody (bNAb; VRC07-523-LS, n=6), a bNAb with the DEL mutation (n=6) or kept untreated (n=5). Lymph nodes were collected at three timepoints (pre-infusion, day 14 and week 8) and immune cells from five subsets were sorted and profilled by mRNA-Seq.
 
Contributor(s) Fourati S, Sekaly R, Douek DC, Dias J, Koup RA
Citation(s) 39198422
Submission date Jan 31, 2024
Last update date Oct 22, 2024
Contact name Slim Fourati
E-mail(s) slim.fourati@northwestern.edu
Organization name Northwestern University
Department Medicine
Lab Fourati
Street address 300 E Superior St
City Chicago
State/province Illinois
ZIP/Postal code 60611
Country USA
 
Platforms (1)
GPL23949 Illumina HiSeq 4000 (Macaca mulatta)
Samples (175)
GSM8057579 DGAM_wk8_Bcells
GSM8057580 DGAM_wk8_pDCs
GSM8057581 DGBG_D14_Bcells
This SubSeries is part of SuperSeries:
GSE254837 Administration of anti-HIV-1 broadly neutralizing monoclonal antibodies with increased binding affinity to Fcg receptors during acute SHIV infection shapes innate and adaptive cellular immunity
Relations
BioProject PRJNA1071688

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Supplementary file Size Download File type/resource
GSE254781_RAW.tar 21.0 Mb (http)(custom) TAR (of TXT)
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Raw data are available in SRA

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