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| Status |
Public on Jul 29, 2024 |
| Title |
Upstream regulator of genomic imprinting in rice is a small RNA-associated chromatin remodeler [PCR_product_deep_sequencing] |
| Organism |
Oryza sativa |
| Experiment type |
Other
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| Summary |
Knock down of CLSY3 in rice caused endosperm development defects. We investigated the molecular effects of loss of CLSY3 in rice endosperm by profiling sRNA, targeted bisulfite PCR,whole genome bisulfite sequencing and mRNA transcriptomes .These analyses revealed the roles of CLSY3 in Endosperm
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| Overall design |
We have performed deep sequencing of PCR products amplified from endosperm (WPxPB1) to check genomic imprinting status of CLSY3, ARF22 and SHH1 genes
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| Contributor(s) |
Shivaprasad PV, Pal AK |
| Citation(s) |
39242590 |
| |
| Submission date |
Feb 29, 2024 |
| Last update date |
Oct 08, 2024 |
| Contact name |
Shivaprasad Padubidri V. |
| E-mail(s) |
shivaprasad@ncbs.res.in, epigeneticsncbsindia@gmail.com, harshith200cy@gmail.com
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| Phone |
+91-80-2366-6511
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| Organization name |
National Centre for Biological Sciences - TIFR
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| Street address |
UAS-GKVK Campus
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| City |
Bangalore |
| ZIP/Postal code |
560065 |
| Country |
India |
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| Platforms (1) |
| GPL27660 |
Illumina NovaSeq 6000 (Oryza sativa) |
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| Samples (2) |
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| This SubSeries is part of SuperSeries: |
| GSE229961 |
Upstream regulator of genomic imprinting in rice is a small RNA-associated chromatin remodeler |
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| Relations |
| BioProject |
PRJNA1082418 |
