 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Apr 29, 2024 |
| Title |
Prenatal phenotypes and pregnancy outcomes of fetuses with 16p11.2 microdeletion/microduplication |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by SNP array
|
| Summary |
Background: Chromosomal 16p11.2 deletions and duplications are genomic disorders which are characterized by neurobehavioral abnormalities, obesity, congenital abnormalities and so on. However, the prenatal phenotypes of 16p11.2 copy number variations (CNVs) are still not well described till now. This study aimed to provide an elaborate summary of intrauterine phenotypic features for such genomic disorders. Methods: Twenty prenatal amniotic fluid samples diagnosed with 16p11.2 microdeletions/microduplications were obtained from pregnant women who opted for invasive prenatal testing. Karyotypic analysis and chromosomal microarray analysis (CMA) were performed in parallel. The pregnancy outcomes and health conditions after birth for all cases were followed up. Meanwhile, we made a pooled analysis on the prenatal phenotypes for the published cases carrying 16p11.2 CNVs. Results: 20 fetuses (20/20884, 0.10%) with 16p11.2 CNVs were identified: five 16p11.2 BP2-BP3 deletion, ten 16p11.2 BP4-BP5 deletion and five 16p11.2 BP4-BP5 duplication. Abnormal ultrasound findings were recorded in ten participants with 16p11.2 deletions.Various degrees of intrauterine phenotypic features, ranging from normal to abnormal, were observed. No ultrasound abnormalities were observed for all 16p11.2 duplication cases during the pregnancy period. For 16p11.2 deletions, eleven cases terminated their pregnancies. For 16p11.2 duplications, four cases gave birth to healthy neonates except one was lost to follow up. Conclusions: Diverse prenatal phenotypes were presented in 16p11.2 CNVs, ranging from normal to abnormal. For 16p11.2 BP4-BP5 deletion, the most common structural and non-structural abnormalities were the abnormality of the vertebral column or rib and thickened nuchal translucency, respectively. 16p11.2 BP2-BP3 deletion might be closely associated with fetal growth restriction and single umbilical artery. No representative ultrasound findings for 16p11.2 duplication were observed till now. Considering the variable expressivity and incomplete penetrance of 16p11.2 CNVs, long term follow up after birth should be carried out for these cases.
We identified 20 fetuses carrying the 16p11.2 microdeletions and microduplications using chromosomal microarray analysis. And diverse prenatal phenotypes and the critical genes involved in the deleted/duplicated regions were described in this study.
|
| |
|
| Overall design |
15 pregnancies with 16p11.2 microdeletions and five with 16p11.2 microduplications were included. **Please note that raw data CEL files for ？samples (out of total ？) have been lost and thus are not provided***
|
| Web link |
https://pubmed.ncbi.nlm.nih.gov/39039444/
|
| |
|
| Contributor(s) |
Yue F, Zhang H |
| Citation(s) |
39039444 |
| |
| Submission date |
Apr 25, 2024 |
| Last update date |
Aug 03, 2024 |
| Contact name |
Hongguo Zhang |
| E-mail(s) |
zhanghguo@jlu.edu.cn
|
| Organization name |
First Hospital, Jilin University, Changchun, China
|
| Department |
Center for Reproductive Medicine and Center for Prenatal Diagnosis
|
| Street address |
1 Xinmin Street, Changchun, Jilin 130021, P.R. China
|
| City |
Changchun |
| State/province |
Jilin |
| ZIP/Postal code |
130021 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL18637 |
[CytoScan750K_Array] Affymetrix CytoScan 750K Array |
|
| Samples (20)
|
| GSM8231882 |
Amniotic fluid cells from Homo sapiens Case No. 1 |
| GSM8231883 |
Amniotic fluid cells from Homo sapiens Case No. 2 |
| GSM8231884 |
Amniotic fluid cells from Homo sapiens Case No. 3 |
| GSM8231885 |
Amniotic fluid cells from Homo sapiens Case No. 4 |
| GSM8231886 |
Amniotic fluid cells from Homo sapiens Case No. 5 |
| GSM8231887 |
Amniotic fluid cells from Homo sapiens Case No. 6 |
| GSM8231888 |
Amniotic fluid cells from Homo sapiens Case No. 7 |
| GSM8231889 |
Amniotic fluid cells from Homo sapiens Case No. 8 |
| GSM8231890 |
Amniotic fluid cells from Homo sapiens Case No. 9 |
| GSM8231891 |
Amniotic fluid cells from Homo sapiens Case No. 10 |
| GSM8231892 |
Amniotic fluid cells from Homo sapiens Case No. 11 |
| GSM8231893 |
Amniotic fluid cells from Homo sapiens Case No. 12 |
| GSM8231894 |
Amniotic fluid cells from Homo sapiens Case No. 13 |
| GSM8231895 |
Amniotic fluid cells from Homo sapiens Case No. 14 |
| GSM8231896 |
Amniotic fluid cells from Homo sapiens Case No. 15 |
| GSM8231897 |
Amniotic fluid cells from Homo sapiens Case No. 16 |
| GSM8231898 |
Amniotic fluid cells from Homo sapiens Case No. 17 |
| GSM8231899 |
Amniotic fluid cells from Homo sapiens Case No. 18 |
| GSM8231900 |
Amniotic fluid cells from Homo sapiens Case No. 19 |
| GSM8231901 |
Amniotic fluid cells from Homo sapiens Case No. 20 |
|
| Relations |
| BioProject |
PRJNA1104671 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE265911_RAW.tar |
509.0 Mb |
(http)(custom) |
TAR (of CEL) |
| Raw data provided as supplementary file |
| Processed data not provided for this record |
|
|
|
|
 |
Less...
More...