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Series GSE32641 Query DataSets for GSE32641
Status Public on Sep 25, 2012
Title Major functional transcriptome of an inferred center regulator of an ER(-) breast cancer model system
Organism Homo sapiens
Experiment type Expression profiling by array
Summary We aimed to find clinically relevant gene activities ruled by the signal transducer and activator of transcription 3 (STAT3) proteins in an ER(-) breast cancer population via network approach. STAT3 is negatively associated with both lymph nodal category and stage. MYC is a component of STAT3 network. MYC and STAT3 may co-regulate gene expressions for Warburg effect, stem cell like phenotype, cell proliferation and angiogenesis. We identified a STAT3 network in silico showing its ability in predicting its target gene expressions primarily for specific tumor subtype, tumor progression, treatment options and prognostic features. The aberrant expressions of MYC and STAT3 are enriched in triple negatives (TN). They promote histological grade, vascularity, metastasis and tumor anti-apoptotic activities. VEGFA, STAT3, FOXM1 and METAP2 are druggable targets. High levels of METAP2, MMP7, IGF2 and IGF2R are unfavorable prognostic factors. STAT3 is an inferred center regulator at early cancer development predominantly in TN.
 
Overall design 91 specimens of primary infiltrating ductal carcinoma of breast (IDC) included triple negatives(48/91), ERBB2+(29/91),ER(-)PR(+)HER(-)(5/91), ER(-)PR(+)HER(+)(6/91) and ER(-) but HER(?)(3/91). Five specimens for metaplastic carcinoma of breast (MCB) were included. Seven non-tumor samples were surgically taken from breast tissue adjacent to some of 91 ER(-) IDC breast tumors as a control in this study.
 
Contributor(s) Liu LD, Chang L, Kuo W, Hwa H, Lin Y, Huang S, Chen C, Chang K, Hsieh F
Citation(s) 22553414
Submission date Oct 05, 2011
Last update date Jan 02, 2014
Contact name Fon-Jou Hsieh
E-mail(s) fjhsieh@ntu.edu.tw
Organization name National Taiwan University
Department Department of obstetrics and gynecology
Street address No. 7, Chung-Shan South Rd
City Taipei
ZIP/Postal code 100
Country Taiwan
 
Platforms (1)
GPL887 Agilent-012097 Human 1A Microarray (V2) G4110B (Feature Number version)
Samples (102)
GSM237144 breast tumor part_IDC_rep1_1355
GSM237147 breast tumor part_IDC_rep1_1431
GSM237148 breast tumor part_IDC_rep1_1433
Relations
BioProject PRJNA146971

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE32641_RAW.tar 449.0 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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