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Status |
Public on Mar 21, 2006 |
Title |
Soybean cultivars,Soybean Hydrophobic Protein(HPS) comparison |
Organism |
Glycine max |
Experiment type |
Genome variation profiling by array
|
Summary |
The Hydrophobic protein from soybean (HPS) locus is polymorphic among soybean cultivars and copy-number changes in the tandem array at this locus are directly correlated with expression level and seed coat luster phenotypes. Keywords: comparative genomic hybridization
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Overall design |
The indentity for HPS on the array is AW156395, Gm-r1070-2255. ExptI Mukden(shiny) vs OX281(dull) biological rep 1;ExptII Mukden vs OX281 biological rep 2;ExptIII Harosoy 63(dull) vs Sooty(bloom) biological rep 1 6 slide hybridizations including dye swap,6 genomic DNA samples,4 soybean cultivars
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Contributor(s) |
Gijzen M, Kuflu K, Moy P |
Citation(s) |
16536872 |
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Submission date |
Dec 12, 2005 |
Last update date |
May 19, 2012 |
Contact name |
Mark Gijzen |
E-mail(s) |
gijzenm@agr.gc.ca
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Phone |
519-457-1470
|
Fax |
519-457-3997
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Organization name |
SCPFRC London
|
Department |
Agriculture & AgriFood Canada
|
Lab |
Plant Biochemistry
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Street address |
1391 Sandford St
|
City |
London |
State/province |
ON |
ZIP/Postal code |
N5V 4T3 |
Country |
Canada |
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Platforms (1) |
GPL3015 |
Keck Glycine max 18kA cDNA Prints101-108 |
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Samples (6)
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GSM87407 |
ExptI #148927 Mukden & OX281 biological rep 1 |
GSM87408 |
ExptI #148932 Mukden & OX281 biological rep 1 |
GSM87409 |
ExptII #148943 Mukden & OX281 biological rep 2 |
GSM87410 |
ExptII #148944 Mukden & OX281 biological rep 2 |
GSM87411 |
ExptIII #148945 Sooty & Harosoy 63 biological rep 1 |
GSM87412 |
ExptIII #148946 Sooty & Harosoy 63 biological rep 1 |
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Relations |
BioProject |
PRJNA94015 |