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Series GSE3810 Query DataSets for GSE3810
Status Public on Mar 21, 2006
Title Soybean cultivars,Soybean Hydrophobic Protein(HPS) comparison
Organism Glycine max
Experiment type Genome variation profiling by array
Summary The Hydrophobic protein from soybean (HPS) locus is polymorphic among soybean cultivars and copy-number changes in the tandem array at this locus are directly correlated with expression level and seed coat luster phenotypes.
Keywords: comparative genomic hybridization
Overall design The indentity for HPS on the array is AW156395, Gm-r1070-2255. ExptI Mukden(shiny) vs OX281(dull) biological rep 1;ExptII Mukden vs OX281 biological rep 2;ExptIII Harosoy 63(dull) vs Sooty(bloom) biological rep 1
6 slide hybridizations including dye swap,6 genomic DNA samples,4 soybean cultivars
Contributor(s) Gijzen M, Kuflu K, Moy P
Citation(s) 16536872
Submission date Dec 12, 2005
Last update date May 19, 2012
Contact name Mark Gijzen
Phone 519-457-1470
Fax 519-457-3997
Organization name SCPFRC London
Department Agriculture & AgriFood Canada
Lab Plant Biochemistry
Street address 1391 Sandford St
City London
State/province ON
ZIP/Postal code N5V 4T3
Country Canada
Platforms (1)
GPL3015 Keck Glycine max 18kA cDNA Prints101-108
Samples (6)
GSM87407 ExptI #148927 Mukden & OX281 biological rep 1
GSM87408 ExptI #148932 Mukden & OX281 biological rep 1
GSM87409 ExptII #148943 Mukden & OX281 biological rep 2
BioProject PRJNA94015

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE3810_Complete_data_table.txt 3.3 Mb (ftp)(http) TXT
GSE3810_RAW.tar 860.6 Mb (http)(custom) TAR (of TIFF, TXT)

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