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| Status |
Public on Mar 21, 2006 |
| Title |
ExptIII #148946 Sooty & Harosoy 63 biological rep 1 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Sooty biological rep 1
|
| Organism |
Glycine max |
| Characteristics |
soybean cultivar, bloom phenotype with trace surface HPS
|
| Extracted molecule |
genomic DNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
Harosoy 63 biological rep 1
|
| Organism |
Glycine max |
| Characteristics |
soybean cultivar, dull-seeded phenotype with abundant surface HPS
|
| Extracted molecule |
genomic DNA |
| Label |
Cy5
|
| |
|
| |
| Description |
Comparative genomic hybridization for HPS study, 2 soybean cultivars,Sooty & Harosoy 63
|
| Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity
|
| |
|
| Submission date |
Dec 12, 2005 |
| Last update date |
Mar 21, 2006 |
| Contact name |
Mark Gijzen |
| E-mail(s) |
gijzenm@agr.gc.ca
|
| Phone |
519-457-1470
|
| Fax |
519-457-3997
|
| Organization name |
SCPFRC London
|
| Department |
Agriculture & AgriFood Canada
|
| Lab |
Plant Biochemistry
|
| Street address |
1391 Sandford St
|
| City |
London |
| State/province |
ON |
| ZIP/Postal code |
N5V 4T3 |
| Country |
Canada |
| |
|
| Platform ID |
GPL3015 |
| Series (1) |
| GSE3810 |
Soybean cultivars,Soybean Hydrophobic Protein(HPS) comparison |
|
| Data table header descriptions |
| ID_REF |
rearranged for LRGC scanner |
| CH1-VOL |
Cy3 intensity |
| CH1-Bkgd |
Cy3 background |
| CH1-sVOL |
Cy3 background subtracted intensity |
| CH2-VOL |
Cy5 intensity |
| CH2-Bkgd |
Cy5 background |
| CH2-sVOL |
Cy5 background subtracted intensity |
| RATIO |
CH2-VOL divided by CH1-VOL |
| VALUE |
log2 ratio |
| Data table |
| ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
| Gm00024cDNA18kA |
23.393 |
9.412 |
13.981 |
36.220 |
22.694 |
13.526 |
1.548 |
0.631 |
| Gm00120cDNA18kA |
34.814 |
8.742 |
26.072 |
49.943 |
22.403 |
27.540 |
1.435 |
0.521 |
| Gm00216cDNA18kA |
13.182 |
8.635 |
4.546 |
27.472 |
22.805 |
4.668 |
2.084 |
1.059 |
| Gm00312cDNA18kA |
38.146 |
8.996 |
29.150 |
53.479 |
23.659 |
29.820 |
1.402 |
0.487 |
| Gm00012cDNA18kA |
37.501 |
9.476 |
28.025 |
53.320 |
24.118 |
29.202 |
1.422 |
0.508 |
| Gm00108cDNA18kA |
52.488 |
9.933 |
42.556 |
83.896 |
24.304 |
59.592 |
1.598 |
0.677 |
| Gm00204cDNA18kA |
130.952 |
11.623 |
119.329 |
130.661 |
24.007 |
106.654 |
0.998 |
-0.003 |
| Gm00300cDNA18kA |
42.024 |
11.614 |
30.410 |
42.315 |
23.056 |
19.259 |
1.007 |
0.010 |
| Gm00408cDNA18kA |
19.239 |
10.369 |
8.870 |
27.791 |
22.356 |
5.434 |
1.444 |
0.531 |
| Gm00504cDNA18kA |
17.969 |
13.137 |
4.832 |
29.182 |
27.718 |
1.464 |
1.624 |
0.700 |
| Gm00600cDNA18kA |
34.294 |
12.844 |
21.450 |
42.005 |
27.785 |
14.220 |
1.225 |
0.293 |
| Gm00696cDNA18kA |
21.480 |
9.584 |
11.896 |
33.307 |
22.789 |
10.517 |
1.551 |
0.633 |
| Gm00396cDNA18kA |
15.510 |
8.898 |
6.612 |
28.426 |
22.949 |
5.477 |
1.833 |
0.874 |
| Gm00492cDNA18kA |
29.084 |
8.419 |
20.665 |
38.493 |
22.603 |
15.889 |
1.324 |
0.404 |
| Gm00588cDNA18kA |
16.707 |
8.078 |
8.629 |
29.572 |
22.817 |
6.755 |
1.770 |
0.824 |
| Gm00684cDNA18kA |
17.016 |
7.768 |
9.247 |
30.825 |
23.435 |
7.390 |
1.812 |
0.857 |
| Gm00792cDNA18kA |
21.915 |
7.521 |
14.394 |
32.907 |
23.443 |
9.464 |
1.502 |
0.586 |
| Gm00888cDNA18kA |
9.381 |
8.099 |
1.282 |
25.575 |
23.603 |
1.971 |
2.726 |
1.447 |
| Gm00984cDNA18kA |
32.635 |
8.593 |
24.041 |
46.397 |
24.089 |
22.308 |
1.422 |
0.508 |
| Gm01080cDNA18kA |
15.745 |
26.193 |
0.000 |
30.399 |
30.914 |
0.000 |
1.931 |
0.949 |
Total number of rows: 19200
Table truncated, full table size 1269 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM87412.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
| GSM87412_Cy3.tif.gz |
79.3 Mb |
(ftp)(http) |
TIFF |
| GSM87412_Cy5.tif.gz |
80.5 Mb |
(ftp)(http) |
TIFF |
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