|
| Status |
Public on Mar 31, 2016 |
| Title |
SRiD- A facile DNA barcode generation and management system for high throughput screening |
| Organism |
synthetic construct |
| Experiment type |
Other
|
| Summary |
20 random DNA barcodes were designed in silico and transfected into PC3 cells. Barcodes were sequenced using Illumina-Miseq technology to find the sequence and their respective copy numbers. Current file contains the raw data of these DNA barcodes in fastq format
|
| |
|
| Overall design |
Validating an algorithm called SRiD that generates random DNA barcodes that do not match a genome of interest, in this case human genome. 20 DNA barcodes were used for this validation.
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| |
|
| Contributor(s) |
Nadendla SK, Gidrol X |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Mar 31, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
sandeep kumar Nadendla |
| E-mail(s) |
nsknadendla@gmail.com
|
| Phone |
0033438780293
|
| Organization name |
CEA
|
| Department |
iRTSV/Biomics
|
| Lab |
Biomics
|
| Street address |
17 Rue des martyrs
|
| City |
Grenoble |
| State/province |
Isere |
| ZIP/Postal code |
38000 |
| Country |
France |
| |
|
| Platforms (1) |
| GPL17769 |
Illumina MiSeq (synthetic construct) |
|
| Samples (1) |
|
| Relations |
| BioProject |
PRJNA279936 |
| SRA |
SRP056729 |
