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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 25, 2013 |
| Title |
Illumina MiSeq (synthetic construct) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
synthetic construct |
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| Submission date |
Sep 25, 2013 |
| Last update date |
Sep 25, 2013 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (1225)
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GSM1240020, GSM1240021, GSM1410678, GSM1410679, GSM1410680, GSM1410681
GSM1410682, GSM1410683, GSM1410684, GSM1410685, GSM1410686, GSM1410687, GSM1410688, GSM1410689, GSM1410690, GSM1410691, GSM1410692, GSM1410693, GSM1410694, GSM1410695, GSM1410696, GSM1410697, GSM1410698, GSM1410699, GSM1410700, GSM1410701, GSM1410703, GSM1410705, GSM1410706, GSM1410707, GSM1410708, GSM1410709, GSM1410710, GSM1410711, GSM1410712, GSM1410713, GSM1410714, GSM1410715, GSM1410716, GSM1410717, GSM1410718, GSM1410719, GSM1410720, GSM1410721, GSM1410722, GSM1410723, GSM1410724, GSM1410725, GSM1410726, GSM1410727, GSM1410728, GSM1410729, GSM1410730, GSM1410731, GSM1410732, GSM1410733, GSM1410734, GSM1410735, GSM1410736, GSM1410737, GSM1410738, GSM1410739, GSM1410740, GSM1410741, GSM1410742, GSM1410743, GSM1410744, GSM1410745, GSM1410746, GSM1410747, GSM1410748, GSM1410749, GSM1410750, GSM1410751, GSM1410752, GSM1410753, GSM1410754, GSM1410755, GSM1410756, GSM1410757, GSM1410758, GSM1410759, GSM1410760, GSM1410761, GSM1544297, GSM1544298, GSM1544299, GSM1544300, GSM1544301, GSM1544302, GSM1544303, GSM1544304, GSM1544305, GSM1544306, GSM1544307, GSM1544308, GSM1544309, GSM1544310, GSM1544311, GSM1544312, GSM1544313, GSM1544314, GSM1544315, GSM1544316, GSM1544317, GSM1544318, GSM1544319, GSM1544320, GSM1544321, GSM1544322, GSM1544323, GSM1544324, GSM1544325, GSM1544326, GSM1544327, GSM1544328, GSM1544329, GSM1544330, GSM1544331, GSM1544332, GSM1553447, GSM1553448, GSM1553449, GSM1553450, GSM1637533, GSM1637534, GSM1645025, GSM1646830, GSM1911083, GSM1916141, GSM1916142, GSM2100643, GSM2100644, GSM2100645, GSM2100646, GSM2100647, GSM2100648, GSM2100649, GSM2100650, GSM2100651, GSM2100652, GSM2100653, GSM2100654, GSM2100655, GSM2100656, GSM2100657, GSM2100658, GSM2100659, GSM2100660, GSM2100661, GSM2100662, GSM2100663, GSM2100664, GSM2100665, GSM2100666, GSM2100667, GSM2100668, GSM2100669, GSM2100670, GSM2100671, GSM2100672, GSM2100673, GSM2100674, GSM2100675, GSM2100676, GSM2100677, GSM2100678, GSM2100679, GSM2100680, GSM2100681, GSM2100682, GSM2100683, GSM2100684, GSM2100685, GSM2100686, GSM2100687, GSM2100688, GSM2100689, GSM2100690, GSM2100691, GSM2100692, GSM2100693, GSM2100694, GSM2100695, GSM2100696, GSM2100697, GSM2100698, GSM2100699, GSM2100700, GSM2100701, GSM2100702, GSM2100703, GSM2100704, GSM2100705, GSM2100706, GSM2100707, GSM2100708, GSM2100709, GSM2100710, GSM2100711, GSM2100712, GSM2100713, GSM2100714, GSM2100715, GSM2100716, GSM2100717, GSM2100718, GSM2100719, GSM2100720, GSM2100721, GSM2100722, GSM2100723, GSM2100724, GSM2100725, GSM2100726, GSM2100727, GSM2100728, GSM2100729, GSM2100730, GSM2100731, GSM2100732, GSM2100733, GSM2100734, GSM2100735, GSM2100736, GSM2100737, GSM2100738, GSM2100739, GSM2100740, GSM2100741, GSM2100742, GSM2100743, GSM2100744, GSM2100745, GSM2100746, GSM2100747, GSM2100748, GSM2100749, GSM2100750, GSM2100751, GSM2100752, GSM2100753, GSM2100754, GSM2100755, GSM2100756, GSM2100757, GSM2100758, GSM2100759, GSM2100760, GSM2100761, GSM2100762, GSM2100763, GSM2100764, GSM2100765, GSM2100766, GSM2100767, GSM2100768, GSM2100769, GSM2100770, GSM2100771, GSM2100772, GSM2100773, GSM2100774, GSM2100775, GSM2100776, GSM2100777, GSM2100778, GSM2100779, GSM2100780, GSM2100781, GSM2100782, GSM2100783, GSM2100784, GSM2100785, GSM2100786, GSM2100787, GSM2100788, GSM2100789, GSM2100790, GSM2100791, GSM2100792, GSM2100793, GSM2100794, GSM2100795, GSM2100796, GSM2100797, GSM2100798, GSM2100799, GSM2100800, GSM2100801, GSM2100802, GSM2100803, GSM2100804, GSM2100805, GSM2100806, GSM2100807, GSM2100808, GSM2100809, GSM2100810, GSM2100811, GSM2100812, GSM2100813, GSM2100814, GSM2100815, GSM2100816, GSM2100817, GSM2100818, GSM2100819, GSM2100820, GSM2100821, GSM2100822, GSM2100823, GSM2100824, GSM2100825, GSM2100826, GSM2100827, GSM2100828, GSM2100829, GSM2100830, GSM2100831, GSM2100832, GSM2100833, GSM2100834, GSM2100835, GSM2100836, GSM2100837, GSM2100838, GSM2100839, GSM2100840, GSM2100841, GSM2100842, GSM2100843, GSM2100844, GSM2100845, GSM2100846, GSM2100847, GSM2100848, GSM2100849, GSM2100850, GSM2218775, GSM2218780, GSM2242240, GSM2242241, GSM2242249, GSM2242257, GSM2242268, GSM2242269, GSM2253165, GSM2253166, GSM2253167, GSM2258009, GSM2258010, GSM2258011, GSM2258024, GSM2258025, GSM2258026, GSM2327853, GSM2327854, GSM2327855, GSM2327868, GSM2327869, GSM2327870, GSM2327880, GSM2327881, GSM2327882, GSM2327892, GSM2327893, GSM2327894, GSM2396864, GSM2396865, GSM2396866, GSM2396867, GSM2396868, GSM2396869, GSM2396870, GSM2396871, GSM2396872, GSM2396873, GSM2396874, GSM2396875, GSM2396876, GSM2396877, GSM2396878, GSM2396879, GSM2396880, GSM2396881, GSM2396882, GSM2396883, GSM2396884, GSM2396885, GSM2396886, GSM2396887, GSM2396888, GSM2396889, GSM2396890, GSM2396891, GSM2396892, GSM2396893, GSM2396894, GSM2396895, GSM2396896, GSM2396897, GSM2396898, GSM2396899, GSM2396900, GSM2396901, GSM2396902, GSM2396903, GSM2396904, GSM2396905, GSM2396906, GSM2396907, GSM2396908, GSM2396909, GSM2396910, GSM2396911, GSM2396912, GSM2396913, GSM2396914, GSM2396915, GSM2396916, GSM2396917, GSM2396918, GSM2396919, GSM2396920, GSM2396921, GSM2396922, GSM2396923, GSM2396924, GSM2396925, GSM2396926, GSM2396927, GSM2396928, GSM2396929, GSM2396930, GSM2396931, GSM2396932, GSM2396933, GSM2396934, GSM2396935, GSM2396936, GSM2396937, GSM2396938, GSM2396939, GSM2396940, GSM2396941, GSM2396942, GSM2396943, GSM2396944, GSM2491487, GSM2491488, GSM2515818, GSM2515819, GSM2515820, GSM2515821, GSM2515822, GSM2515823, GSM2515824, GSM2515825, GSM2515826, GSM2515827, GSM2515828, GSM2515829, GSM2515830, GSM2515831, GSM2515832, GSM2515833, GSM2515834, GSM2515835, GSM2515836, GSM2515837, GSM2515838, GSM2515839, GSM2515840, GSM2515841, GSM2515842, GSM2515843, GSM2515844, GSM2515845, GSM2515846, GSM2515847, GSM2515848, GSM2515849, GSM2515850, GSM2515851, GSM2515852, GSM2515853, GSM2515854, GSM2515855, GSM2515856, GSM2515857, GSM2515858, GSM2515859, GSM2515860, GSM2515861, GSM2537874, GSM2537875, GSM2537876, GSM2537877, GSM2537878...
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| Series (100)
|
| GSE51170 |
Identification of building principles of methylation states at CG rich regions by high-throughput editing of a mammalian genome |
| GSE58426 |
Cas9 target DNA specificity |
| GSE63606 |
An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments |
| GSE67053 |
Bias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure |
| GSE67339 |
A genome-wide CRISPR library for high-throughput genetic screening in Drosophila cells |
| GSE67441 |
SRiD- A facile DNA barcode generation and management system for high throughput screening |
| GSE74070 |
Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences |
| GSE74277 |
Systematic discovery of cap-independent translation sequences in human and viral genomes |
| GSE79667 |
Cas9 target DNA specificity in vitro and in vivo (S. cerevisiae) |
| GSE83780 |
p53 Regulates Enhancer Accessibility and Activity in Response to DNA Damage |
| GSE84589 |
Cis-regulatory landscape of four cell types of the retina |
| GSE84888 |
Distinct roles for motif affinity, chromatin state, and co-regulatory motifs in PPARγ binding and enhancer activity |
| GSE85122 |
Coop-seq: quantitative measurement of cooperative binding between transcription factors to hundreds of variants simultaneously |
| GSE90065 |
shRNA screen identifies lncRNAs required for acute myeloid leukemia progresion |
| GSE90072 |
lncRNA dependencies in acute myeloid leukemia |
| GSE94895 |
Digital counting of nucleic acid molecules using random base molecular barcodes |
| GSE95526 |
Quantitative Specificity of STAT1 and Several Variants. |
| GSE97432 |
An arrayed CRISPR library for individual, combinatorial and multiplexed gene knockout II |
| GSE97434 |
An arrayed CRISPR library for individual, combinatorial and multiplexed gene knockout |
| GSE98669 |
Methyl-Spec-seq control data sets |
| GSE102219 |
Quantitative profiling of BATF family proteins/JUNB/IRF hetero-trimers using Spec-seq |
| GSE102703 |
Methyl-Spec-seq data for HOXB13 |
| GSE107304 |
Increasing miRNA sequencing accuracy using an RNA circularization approach |
| GSE108357 |
Randomized PAM depeletion of NmeCas9 |
| GSE109098 |
Spec-seq data for ZFY and its truncated variants |
| GSE111116 |
The gut microbiome can transmit environmental responses to the next generation [16s-amplicon] |
| GSE111117 |
The gut microbiome can transmit environmental responses to the next generation |
| GSE111936 |
Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding |
| GSE118118 |
A combination of transcription factors mediates inducible interchromosomal contacts |
| GSE122542 |
HaloTag-based conjugation of proteins to barcoding-oligonucleotides |
| GSE123443 |
Randomized PAM depletion of AsCas12a |
| GSE124509 |
An atlas of single-base-resolution N6-methyl-adenine methylomes redefines RNA demethylase function as suppressors of disruptive RNA methylation |
| GSE130322 |
Biochemical analysis of chromatin targeting by Tn5 transposase |
| GSE130377 |
Randomized PAM depletion of phylogenetically-diverse Cas12a nucleases |
| GSE131506 |
HIV-1 RNA structure and heterogeneity analysis |
| GSE133363 |
DNA sequencing for multiple rounds of the pMHC-yeast display selection for TCR6, TCR7 and FluTCR [other] |
| GSE133364 |
RNA seq on SP specific CD8+ T cells, Ly49+ and Ly49-CD8+ T cells from MOG and MOG + SP immunized mice and DNA sequencing for multiple rounds of the pMHC-yeast display selection for TCR6, TCR7 and FluTCR |
| GSE135464 |
Model-driven generation of artificial yeast promoters |
| GSE136871 |
Linked optical and gene expression profiling of single cells at high throughput |
| GSE139037 |
Casposase structure and the mechanistic link between DNA transposition and spacer acquisition by CRISPR-Cas |
| GSE139199 |
Shape of promoter antisense RNAs regulates ligand-induced transcription activation |
| GSE139415 |
CRISPRi proliferation dropout screen of EGFR cis-regulatory elements |
| GSE139417 |
Functional enhancers shape extrachromosomal oncogene amplifications |
| GSE144450 |
Genome-wide CRISPR screening combined with ATAC-see assay |
| GSE144454 |
A genome wide screening for effectors of chromatin accessibility |
| GSE146826 |
High Throughput pMHC-I Tetramer Library Production Using Chaperone Mediated Peptide Exchange |
| GSE149061 |
Anomalous reverse transcription through chemical modifications in polyadenosine stretches |
| GSE149170 |
Abundant and equipotent founder cells establish and maintain acute lymphoblastic leukaemia |
| GSE149922 |
Multiplexed measurement of variant abundance and activity reveals VKOR topology, active site and human variant impact |
| GSE150482 |
Single-cell transcriptomic profiling reveals distinct mechanical responses between normal and diseased tendon progenitor cells |
| GSE151070 |
DNA sequencing for multiple rounds of the pMHC-yeast display selection for 2W, Yae and Fat TCR |
| GSE152639 |
Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome [seq] |
| GSE152640 |
Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome |
| GSE154112 |
Three-way combinatorial CRISPR screen for analyzing interactions among druggable targets |
| GSE155736 |
Isoformic PD-1 is tumorigenic in hepatocellular carcinoma through seemingly exhausted αβ T cells |
| GSE155910 |
TRACE-Seq Reveals Clonal Reconstitution Dynamics of Gene Targeted Human Hematopoietic Stem Cells |
| GSE157139 |
CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters |
| GSE160032 |
A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2 [test cohort] |
| GSE160036 |
A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2 |
| GSE163494 |
Shape of promoter antisense RNAs regulates ligand-induced transcription activation [Shape-Map] |
| GSE166259 |
Synthetic spike-in controls enable sensitive and reproducible cell-free methylome interrogation |
| GSE167812 |
SHARC-seq: High throughput in vivo determination of 3D RNA structures and dynamics |
| GSE169706 |
Seq-Scope: Submicrometer-resolution spatial barcoding technology that enables microscopic examination of tissue transcriptome at single cell and subcellular levels |
| GSE171049 |
Chemical capping improves template switching and enhances sequencing of small RNAs |
| GSE172058 |
Parallel functional testing identifies enhancers active in early postnatal mouse brain |
| GSE173083 |
Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics |
| GSE176233 |
Regulatory dissection of the severe COVID-19 risk locus introgressed by Neanderthals. |
| GSE178718 |
Structured elements drive extensive circular RNA translation |
| GSE179614 |
Rapid cell-free characterization of multi-subunit CRISPR effectors and transposons |
| GSE180879 |
Analysis of long and short enhancers in melanoma cell states |
| GSE185666 |
Dual Chromatin Repressors Regulate Hippocampal Development |
| GSE186880 |
Reuterin in the healthy gut microbiome suppresses colorectal cancer growth through altering redox balance |
| GSE189817 |
Spec-seq data for ZNF140, ZNF10, ZFP3, ZNF675, ZNF382 |
| GSE192435 |
CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [CRISPR_set8] |
| GSE196171 |
Whole genome functional characterization of RE1 silencers using a modified massively parallel reporter assay |
| GSE198440 |
Nucleosome sliding by the Chd1 chromatin remodeler relies on the integrity of the DNA duplex |
| GSE201062 |
Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination [probes_assay] |
| GSE201064 |
Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination |
| GSE212159 |
De novo enhancer function in divergent hominin haplotypes |
| GSE213520 |
CRaTER enrichment for on-target gene-editing enables generation of variant libraries in hiPSCs |
| GSE213923 |
A sputum bioassay for airway eosinophilia using an eosinophil peroxidase aptamer |
| GSE217946 |
Direct Selection of an Allosteric RNA-Cleaving DNAzyme for a Protein Target: A Specific DNAzyme for Eosinophil Peroxidase to Monitor Airway Eosinopilia |
| GSE220883 |
Autophagy controls mucus secretion from intestinal goblet cells by alleviating ER stress [16S] |
| GSE220884 |
Autophagy controls mucus secretion from intestinal goblet cells by alleviating ER stress super |
| GSE220949 |
Reconstructing regulative progenitor behaviors in synthetic embryos |
| GSE222531 |
Optimized CRISPR guide RNA library cloning reduces skew and enables more compact genetic screens |
| GSE223044 |
Mutational analysis of IVT mRNAs |
| GSE223658 |
Missense mutations in CRX homeodomain cause dominant retinopathies through two distinct mechanisms [Spec-seq] |
| GSE223659 |
Missense mutations in CRX homeodomain cause dominant retinopathies through two distinct mechanisms |
| GSE224789 |
Analysis of the overlapping tri-nucleosome association with genomic and synthetic DNA |
| GSE224951 |
Systematic surveillance of SARS-CoV-2 reveals dynamics of variant mutagenesis and transmission in a large urban population I |
| GSE226029 |
Histone divergence in Trypanosoma brucei results in unique alterations in nucleosome structure |
| GSE231138 |
Mammalian Genomic Manipulation with Orthogonal Bxb1 DNA Recombinase Sites for the Functional Characterization of Protein Variants |
| GSE231416 |
Systematic surveillance of SARS-CoV-2 reveals dynamics of variant mutagenesis and transmission in a large urban population |
| GSE233599 |
Detection of 5mC in DNA templates generated by PCR and HeLa human genomic DNA by linear PCR using KTq DNA polymerase variants |
| GSE236198 |
SHIELD: A platform for high-throughput screening of barrier DNA elements in human cells |
| GSE253150 |
Prediction of m6A and m5C at single-molecule resolution reveals a transcriptome-wide co-occurrence of RNA modifications |
| GSE271825 |
RNA tertiary structure and conformational dynamics revealed by BASH MaP |
| GSE275157 |
Development and IND-enabling studies of a novel Cas9 genome-edited autologous CD34+ cell therapy to induce fetal hemoglobin for sickle cell disease [sgRNA] |
| GSE275158 |
Development and IND-enabling studies of a novel Cas9 genome-edited autologous CD34+ cell therapy to induce fetal hemoglobin for sickle cell disease |
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| Supplementary data files not provided |
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