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| Status |
Public on Nov 30, 2016 |
| Title |
The microRNA toolkit of insects |
| Organism |
Blattella germanica |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Is there a correlation between miRNA diversity and levels of organismic complexity? Exhibiting extraordinary levels of morphological and developmental complexity, insects are the most diverse animal class on earth. Their evolutionary success was in particular shaped by the innovation of holometabolan metamorphosis in endopterygotes. Previously, miRNA evolution had been linked to morphological complexity, but astonishing variation in the currently available miRNA complements of insects made this link unclear. To address this issue, we sequenced the miRNA complement of the hemimetabolan Blattella germanica and reannotated that of two other hemimetabolan species, Locusta migratoria and Acyrthosiphon pisum, and of four holometabolan species, Apis mellifera, Tribolium castaneum, Bombyx mori and Drosophila melanogaster. Our analyses show that the variation of insect miRNAs is an artefact mainly resulting from poor sampling and inaccurate miRNA annotation, and that insects share a conserved microRNA toolkit of 65 families exhibiting very low variation. For example, the evolutionary shift toward a complete metamorphosis was accompanied only by the acquisition of three and the loss of one miRNA families.
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| Overall design |
We sequenced the small RNA fraction for 2 control Blattella germanica specimens and 2 specimens treated with dsDicer-1.
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| |
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| Contributor(s) |
Ylla G, Fromm B, Belles X, Piulachs MD |
| Citation(s) |
27883064 |
| |
| Submission date |
Jun 14, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Guillem Ylla |
| E-mail(s) |
guillem.ylla@ibe.upf-csic.es
|
| Organization name |
Institute of Evolutionary Biology
|
| Lab |
Belles & Piulachs Labs
|
| Street address |
Passeig Marítim de la Barceloneta, 37
|
| City |
Barcelona |
| State/province |
Catalonia |
| ZIP/Postal code |
08003 |
| Country |
Spain |
| |
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| Platforms (1) |
| GPL22010 |
Illumina MiSeq (Blattella germanica) |
|
| Samples (4)
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| Relations |
| BioProject |
PRJNA325631 |
| SRA |
SRP076544 |
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