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Sample GSM106374 Query DataSets for GSM106374
Status Public on Feb 01, 2009
Title -gcn4, YNB + 0.1 mM 3AT, replicate 2
Sample type RNA
 
Source name S288C gcn4-delta MAT a
Organism Saccharomyces cerevisiae
Characteristics genetic and environmental variation indicated in Sample_title
Extracted molecule total RNA
Extraction protocol Strains were aerobically cultured at 30C and pH 5 in a chemostat diluted at 0.10 hr^-1. Samples were quenced in ice, spun for 3 min, and frozen on liquid N2. Total RNA was extracted with trizol from cells ground at cold temperatures.
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description -gcn4, YNB + 0.1 mM 3AT, replicate 2
Data processing Bioconductor with RMA background correction, qspline normalization, and Li-Wong expression value summaries
 
Submission date Apr 24, 2006
Last update date Oct 22, 2008
Contact name Joel Moxley
E-mail(s) jfmoxley@mit.edu
Organization name MIT
Street address 77 Massachusettes Ave
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL2529
Series (1)
GSE4709 Gcn4p-mediated transcriptional stress response

Data table header descriptions
ID_REF
VALUE Li-Wong summarized expression value

Data table
ID_REF VALUE
1769308_at 612.6287471
1769309_at 57.74525913
1769310_at 8.978881448
1769311_at 1550.791035
1769312_at 654.1163464
1769313_at 535.6283891
1769314_at 679.3510245
1769315_at 6.41671144
1769316_s_at 5.760569275
1769317_at 340.9693758
1769318_at 6.198215622
1769319_at 829.0442537
1769320_at 222.22163
1769321_at 367.1801778
1769322_s_at 160.9176332
1769323_at 748.7814761
1769324_at 360.6364073
1769325_at 253.569786
1769326_at 14.84687537
1769327_at 27.30502967

Total number of rows: 10928

Table truncated, full table size 246 Kbytes.




Supplementary file Size Download File type/resource
GSM106374.CEL.gz 1.5 Mb (ftp)(http) CEL

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