GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM112395
Query DataSets for GSM112395
Status
Public on Sep 30, 2006
Title
NA06994_Nsp_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 3
Biomaterial provider
Coriell NA06994
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA06994
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3811
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1825791
AB
0.007813
16.542
0.460808
0.411794
SNP_A-2222671
AB
0.023438
13.646
0.568648
0.568750
SNP_A-1879718
AB
0.015625
8.787
0.293536
0.298415
SNP_A-2192013
BB
0.007813
21.171
0.007256
0.000000
SNP_A-2161785
BB
0.015625
20.522
0.000000
0.002161
SNP_A-1924692
AB
0.007813
8.425
0.682648
0.458824
SNP_A-2059484
AB
0.007813
11.564
0.572687
0.658930
SNP_A-1921272
BB
0.007813
20.060
0.000000
0.000000
SNP_A-2045948
AB
0.062500
6.688
0.457944
0.365915
SNP_A-2024190
AA
0.007813
19.027
1.000000
1.000000
SNP_A-2166839
BB
0.007813
21.012
0.062997
0.000000
SNP_A-1999651
AB
0.039063
13.397
0.517937
0.416573
SNP_A-2049421
BB
0.007813
19.545
0.000000
0.000000
SNP_A-2220047
AB
0.023438
12.925
0.429128
0.374852
SNP_A-1916560
AB
0.007813
15.565
0.510070
0.440803
SNP_A-2094813
AB
0.007813
8.597
0.482537
0.494481
SNP_A-2190792
AB
0.023438
15.571
0.635204
0.411975
SNP_A-2033074
BB
0.039063
4.969
0.000000
0.179523
SNP_A-2131660
BB
0.062500
15.471
0.299342
0.000000
SNP_A-1780523
AA
0.007813
17.427
1.000000
0.954628
Total number of rows:
267231
Table truncated, full table size
13233 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112395.CEL.gz
43.0 Mb
(ftp)
(http)
CEL
GSM112395_raw.txt.gz
26.0 Mb
(ftp)
(http)
TXT
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
