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Status |
Public on May 25, 2006 |
Title |
Affymetrix GeneChip Early Access Mapping 500K Set Array (250K_Nsp_SNP) |
Technology type |
in situ oligonucleotide |
Distribution |
non-commercial |
Organism |
Homo sapiens |
Manufacturer |
Affymetrix |
Manufacture protocol |
see manufacturer's web site
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|
Description |
Early Access Array The GeneChip® Human Mapping 500K Array Set is comprised of two arrays (Nsp/Sty arrays).
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Submission date |
May 25, 2006 |
Last update date |
Oct 05, 2007 |
Contact name |
Fan Shen |
E-mail(s) |
Fan_Shen@affymetrix.com
|
Phone |
408-731-5762
|
Organization name |
Affymetrix, Inc
|
Street address |
3420 Central Expressway
|
City |
Santa Clara |
State/province |
CA |
ZIP/Postal code |
95051 |
Country |
USA |
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Samples (399)
|
GSM112392, GSM112393, GSM112394, GSM112395, GSM112396, GSM112397
GSM112398, GSM112399, GSM112400, GSM112401, GSM112402, GSM112403, GSM112404, GSM112492, GSM112493, GSM112494, GSM112495, GSM112496, GSM112497, GSM112498, GSM112499, GSM112500, GSM112501, GSM112502, GSM112503, GSM112504, GSM112505, GSM112506, GSM112507, GSM112508, GSM112509, GSM112510, GSM112511, GSM112512, GSM112513, GSM112514, GSM112515, GSM112516, GSM112517, GSM112518, GSM112519, GSM112520, GSM112521, GSM112522, GSM112523, GSM112524, GSM112525, GSM112526, GSM112527, GSM112528, GSM112529, GSM112530, GSM112531, GSM112532, GSM112533, GSM112534, GSM112535, GSM112536, GSM112537, GSM112538, GSM112539, GSM112542, GSM112543, GSM112544, GSM112545, GSM112546, GSM112547, GSM112548, GSM112549, GSM112550, GSM112551, GSM112552, GSM112553, GSM112554, GSM112555, GSM112556, GSM112557, GSM112558, GSM112559, GSM112560, GSM112561, GSM112562, GSM112563, GSM112564, GSM112565, GSM112566, GSM112567, GSM112568, GSM112569, GSM112570, GSM112571, GSM112572, GSM112573, GSM112574, GSM112575, GSM112576, GSM112577, GSM112578, GSM112579, GSM112580, GSM112581, GSM112582, GSM112583, GSM112584, GSM112585, GSM112586, GSM112587, GSM112588, GSM112589, GSM112590, GSM112591, GSM112592, GSM112593, GSM112594, GSM112595, GSM112596, GSM112597, GSM112598, GSM112599, GSM112600, GSM112601, GSM112602, GSM112603, GSM112604, GSM112605, GSM112606, GSM112607, GSM112608, GSM112609, GSM112610, GSM112611, GSM112612, GSM112613, GSM112614, GSM112615, GSM112616, GSM112617, GSM112618, GSM112619, GSM112620, GSM112621, GSM112622, GSM112623, GSM112624, GSM112625, GSM112626, GSM112627, GSM112628, GSM112629, GSM112630, GSM112631, GSM112632, GSM112633, GSM112634, GSM112635, GSM112636, GSM112637, GSM112638, GSM112639, GSM112640, GSM112641, GSM112642, GSM112643, GSM112644, GSM112645, GSM112646, GSM112647, GSM112648, GSM112649, GSM112650, GSM112651, GSM112652, GSM112653, GSM112654, GSM112655, GSM112656, GSM112657, GSM112658, GSM112659, GSM112660, GSM112662, GSM112663, GSM112671, GSM112672, GSM112673, GSM112674, GSM112675, GSM112676, GSM112677, GSM112678, GSM112679, GSM112680, GSM112681, GSM112682, GSM112683, GSM112684, GSM112685, GSM112686, GSM112687, GSM112688, GSM112689, GSM112690, GSM112691, GSM112692, GSM112693, GSM112694, GSM112695, GSM112696, GSM112697, GSM112698, GSM112699, GSM112700, GSM112701, GSM112702, GSM112703, GSM112704, GSM112705, GSM112706, GSM112707, GSM112708, GSM112709, GSM112710, GSM112711, GSM112712, GSM112713, GSM112714, GSM112715, GSM112716, GSM112717, GSM112718, GSM112719, GSM112720, GSM112721, GSM112722, GSM112723, GSM112724, GSM112725, GSM112726, GSM112727, GSM112728, GSM112729, GSM112730, GSM112731, GSM112732, GSM112733, GSM112734, GSM112735, GSM112736, GSM112737, GSM112738, GSM112739, GSM112740, GSM112741, GSM112742, GSM112743, GSM112744, GSM112745, GSM112746, GSM112747, GSM112748, GSM112749, GSM112750, GSM112751, GSM112752, GSM112753, GSM112754, GSM112755, GSM112756, GSM112757, GSM112758, GSM113152, GSM113153, GSM113154, GSM113155, GSM113156, GSM113157, GSM113158, GSM113159, GSM113169, GSM113171, GSM113172, GSM113173, GSM113174, GSM113175, GSM113176, GSM113177, GSM113178, GSM113179, GSM113180, GSM113181, GSM113182, GSM113183, GSM113184, GSM113185, GSM113186, GSM113187, GSM113188, GSM113190, GSM113191, GSM113192, GSM113193, GSM113194, GSM113195, GSM113196, GSM113197, GSM113198, GSM211175, GSM233522, GSM233558, GSM233718, GSM233730, GSM233742, GSM233748, GSM233760, GSM233768, GSM233770, GSM233780, GSM233782, GSM233788, GSM233790, GSM233796, GSM233822, GSM233832, GSM233846, GSM233870, GSM233878, GSM233884, GSM233896, GSM233900, GSM233902, GSM233904, GSM233912, GSM233916, GSM233922, GSM233924, GSM233926, GSM233928, GSM233944, GSM233956, GSM233960, GSM233968, GSM233976, GSM233986, GSM233988, GSM233992, GSM234000, GSM234030, GSM234042, GSM234056, GSM234062, GSM234068, GSM234074, GSM234100, GSM234112, GSM234118, GSM234128, GSM234130, GSM234144, GSM234146, GSM234156, GSM234162, GSM234172, GSM234178, GSM234182, GSM234186, GSM234192, GSM234200, GSM234206, GSM234212, GSM234218, GSM234226, GSM234228, GSM234234, GSM234236, GSM234248, GSM234254, GSM234282, GSM234288, GSM234300, GSM234308, GSM234314, GSM234320, GSM234334, GSM234388, GSM234392, GSM234398, GSM234400, GSM234424, GSM234430, GSM234436, GSM234438, GSM234450, GSM234452, GSM234470, GSM234476, GSM234490, GSM234492, GSM234500, GSM234508
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Series (3) |
GSE5013 |
Global variation of copy number in the human genome_EA |
GSE8508 |
Global variation of copy number in the MCF7 genome |
GSE9222 |
Structural Variation of Chromosomes in Autism Spectrum Disorder. |
|
Data table header descriptions |
ID |
Affymetrix Probe Set ID |
dbSNP RS ID |
refSNP ID |
Chromosome |
|
Genome Version |
|
DB SNP Version |
|
Physical Position |
|
Strand |
|
ChrX pseudo-autosomal region |
|
Cytoband |
|
Flank |
|
Allele A |
|
Allele B |
|
Associated Gene |
|
Genetic Map |
|
Microsatellite |
|
Fragment Length Start Stop |
|
Data table |
ID |
dbSNP RS ID |
Chromosome |
Genome Version |
DB SNP Version |
Physical Position |
Strand |
ChrX pseudo-autosomal region |
Cytoband |
Flank |
Allele A |
Allele B |
Associated Gene |
Genetic Map |
Microsatellite |
Fragment Length Start Stop |
SNP_A-1786207 |
rs539790 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
10822189 |
- |
0 |
p36.22 |
cagaaatcattagcta[A/G]aatacagcctccccca |
A |
G |
NM_017766 // upstream // 31216 // Hs.222219 // FLJ20321 // 54897 // Homo sapiens hypothetical protein FLJ20321 (FLJ20321), mRNA. /// NM_173507 // downstream // 119797 // --- // FLJ37118 // 148345 // Homo sapiens hypothetical protein FLJ37118 (FLJ37118), mRNA. /// ENST00000344008 // upstream // 31216 // --- // --- // --- // --- /// ENST00000308835 // downstream // 119797 // --- // --- // --- // --- |
17.755206573729 // D1S2736 // D1S2667 // --- // --- /// 22.6148864922406 // D1S2736 // UNKNOWN // AFMB049WE9 // ATA9B08 /// 18.381747717857 // D1S2736 // --- // --- // 41639 |
D1S1635 // upstream // 99615 /// D1S1327 // downstream // 37319 |
267 // 10821992 // 10822258 |
SNP_A-2006618 |
rs7531344 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
41176524 |
+ |
0 |
p34.2 |
ctttataactaactca[C/G]aagaccaggatgacaa |
C |
G |
ENST00000326197 // intron // 0 // --- // --- // --- // --- /// ENST00000337495 // intron // 0 // --- // --- // --- // --- /// ENST00000360598 // intron // 0 // --- // --- // --- // --- |
65.7259229334991 // D1S2706 // D1S2722 // --- // --- /// 71.3627765650985 // D1S2706 // D1S2661 // AFMA337WC1 // AFMA203YE9 /// 64.1661086481837 // D1S432 // D1S2722 // --- // --- |
D1S2722 // upstream // 45890 /// D1S3355 // downstream // 30102 |
841 // 41175970 // 41176810 |
SNP_A-2010874 |
rs720318 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
4999367 |
- |
0 |
p36.32 |
taacataaacagatga[C/T]ggaaggaaaagaacta |
C |
T |
NM_018836 // downstream // 245144 // Hs.25924 // SHREW1 // 55966 // Homo sapiens transmembrane protein SHREW1 (SHREW1), mRNA. /// ENST00000359090 // downstream // 245144 // --- // --- // --- // --- /// ENST00000354985 // downstream // 245144 // --- // --- // --- // --- /// ENST00000253998 // downstream // 857770 // --- // --- // --- // --- |
7.92194507656926 // D1S2660 // D1S2132 // --- // --- /// 10.6456739620369 // D1S2845 // UNKNOWN // AFM344WE9 // GATA68D01 /// 11.1287714213836 // D1S2660 // --- // --- // 609730 |
D1S2132 // upstream // 46986 /// D1S1608 // downstream // 85282 |
814 // 4998653 // 4999466 |
SNP_A-2009278 |
rs1980722 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
4874378 |
+ |
0 |
p36.32 |
cccattcccagtctca[C/T]ctttttgttgactagt |
C |
T |
NM_018836 // downstream // 120155 // Hs.25924 // SHREW1 // 55966 // Homo sapiens transmembrane protein SHREW1 (SHREW1), mRNA. /// ENST00000359090 // downstream // 120155 // --- // --- // --- // --- /// ENST00000354985 // downstream // 120155 // --- // --- // --- // --- /// ENST00000253998 // downstream // 982759 // --- // --- // --- // --- |
7.55603234198724 // D1S2660 // D1S2132 // --- // --- /// 10.289644588689 // D1S2845 // UNKNOWN // AFM344WE9 // GATA68D01 /// 11.0281513459119 // D1S2660 // --- // --- // 609730 |
D1S1608 // upstream // 39707 /// D1S3378 // downstream // 112073 |
328 // 4874272 // 4874599 |
SNP_A-2282048 |
rs746881 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
10281076 |
- |
0 |
p36.22 |
ctttggtctcacgtca[C/T]atctgtctgcatctct |
C |
T |
NM_183416 // intron // 0 // Hs.97858 // KIF1B // 23095 // Homo sapiens kinesin family member 1B (KIF1B), transcript variant 2, mRNA. /// NM_015074 // intron // 0 // Hs.97858 // KIF1B // 23095 // Homo sapiens kinesin family member 1B (KIF1B), transcript variant 1, mRNA. /// AB017133 // intron // 0 // Hs.97858 // KIF1B // 23095 // Homo sapiens KIAA0591/KIF1Bbeta mRNA, complete cds. /// ENST00000341829 // intron // 0 // --- // --- // --- // --- /// ENST00000263934 // intron // 0 // --- // --- // --- // --- /// ENST00000355249 // intron // 0 // --- // --- // --- // --- /// ENST00000353409 // intron // 0 // --- // --- // --- // --- |
16.7430104910006 // D1S450 // D1S2736 // --- // --- /// 20.1373456369981 // D1S1612 // D1S2736 // GGAA3A07 // AFMB049WE9 /// 17.3554683458756 // D1S1612 // D1S2736 // --- // --- |
D1S2187 // upstream // 94588 /// D1S3552 // downstream // 320047 |
442 // 10280861 // 10281302 |
SNP_A-2281991 |
rs12120191 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
10280038 |
- |
0 |
p36.22 |
caggtctgcccgaaag[A/G]aattctcaccattcac |
A |
G |
NM_183416 // intron // 0 // Hs.97858 // KIF1B // 23095 // Homo sapiens kinesin family member 1B (KIF1B), transcript variant 2, mRNA. /// NM_015074 // intron // 0 // Hs.97858 // KIF1B // 23095 // Homo sapiens kinesin family member 1B (KIF1B), transcript variant 1, mRNA. /// AB017133 // intron // 0 // Hs.97858 // KIF1B // 23095 // Homo sapiens KIAA0591/KIF1Bbeta mRNA, complete cds. /// ENST00000341829 // intron // 0 // --- // --- // --- // --- /// ENST00000263934 // intron // 0 // --- // --- // --- // --- /// ENST00000355249 // intron // 0 // --- // --- // --- // --- /// ENST00000353409 // intron // 0 // --- // --- // --- // --- |
16.7428291142497 // D1S450 // D1S2736 // --- // --- /// 20.1355212188571 // D1S1612 // D1S2736 // GGAA3A07 // AFMB049WE9 /// 17.3541384738822 // D1S1612 // D1S2736 // --- // --- |
D1S2187 // upstream // 95626 /// D1S3552 // downstream // 319009 |
822 // 10279686 // 10280507 |
SNP_A-2004023 |
rs218379 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
37312411 |
- |
0 |
p34.3 |
gttttgcaaaagataa[C/T]gttcccctgtaatgtg |
C |
T |
NM_000831 // upstream // 143474 // Hs.2389 // GRIK3 // 2899 // Homo sapiens glutamate receptor, ionotropic, kainate 3 (GRIK3), mRNA. /// NM_025079 // upstream // 296835 // Hs.471918 // FLJ23231 // 80149 // Homo sapiens hypothetical protein FLJ23231 (FLJ23231), mRNA. /// ENST00000296212 // upstream // 143474 // --- // --- // --- // --- /// ENST00000324002 // upstream // 296835 // --- // --- // --- // --- |
58.6330973669042 // D1S2723 // D1S255 // --- // --- /// 65.463834747703 // D1S2729 // D1S255 // AFMB037XF1 // AFM260ZG5 /// 59.7802930195496 // --- // D1S432 // 502862 // --- |
D1S255 // upstream // 6395 /// D1S1555 // downstream // 19027 |
1086 // 37311753 // 37312838 |
SNP_A-2002098 |
rs705199 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
34511775 |
- |
0 |
p34.3 |
aaccagacatgaggaa[C/G]gaaactgaagttcaaa |
C |
G |
NM_032884 // downstream // 157953 // Hs.194610 // MGC15882 // 84970 // Homo sapiens hypothetical protein MGC15882 (MGC15882), mRNA. /// NM_005268 // upstream // 377966 // Hs.198249 // GJB5 // 2709 // Homo sapiens gap junction protein, beta 5 (connexin 31.1) (GJB5), mRNA. /// ENST00000270828 // downstream // 157953 // --- // --- // --- // --- /// ENST00000338513 // upstream // 377966 // --- // --- // --- // --- |
55.6407671880194 // D1S2613 // D1S2730 // --- // --- /// 62.8789869712548 // D1S513 // D1S1190 // AFMA134XF9 // UT7270 /// 56.095056143587 // --- // D1S2729 // 45044 // --- |
D1S1439 // upstream // 97411 /// D1S2613 // downstream // 181478 |
434 // 34511725 // 34512158 |
SNP_A-2004022 |
rs218381 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
37312110 |
+ |
0 |
p34.3 |
agagggaggaacttgc[A/G]ccttcataagagactc |
A |
G |
NM_000831 // upstream // 143173 // Hs.2389 // GRIK3 // 2899 // Homo sapiens glutamate receptor, ionotropic, kainate 3 (GRIK3), mRNA. /// NM_025079 // upstream // 297136 // Hs.471918 // FLJ23231 // 80149 // Homo sapiens hypothetical protein FLJ23231 (FLJ23231), mRNA. /// ENST00000296212 // upstream // 143173 // --- // --- // --- // --- /// ENST00000324002 // upstream // 297136 // --- // --- // --- // --- |
58.6318490714577 // D1S2723 // D1S255 // --- // --- /// 65.4635486769552 // D1S2729 // D1S255 // AFMB037XF1 // AFM260ZG5 /// 59.7798035376237 // --- // D1S432 // 502862 // --- |
D1S255 // upstream // 6696 /// D1S1555 // downstream // 18726 |
1086 // 37311753 // 37312838 |
SNP_A-2001337 |
rs475622 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
33876563 |
+ |
0 |
p35.1 |
tcaccatcctggataa[A/G]tgtgctccccaggata |
A |
G |
NM_052896 // intron // 0 // Hs.546470 // CSMD2 // 114784 // Homo sapiens CUB and Sushi multiple domains 2 (CSMD2), mRNA. /// ENST00000241312 // intron // 0 // --- // --- // --- // --- |
53.8945311709889 // D1S201 // D1S2783 // --- // --- /// 62.3599022914233 // D1S513 // D1S1190 // AFMA134XF9 // UT7270 /// 55.5682185902118 // D1S201 // --- // --- // 45044 |
D1S1538 // upstream // 80172 /// D1S2182 // downstream // 25313 |
336 // 33876515 // 33876850 |
SNP_A-2005185 |
rs4360495 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
38991416 |
+ |
0 |
p34.3 |
aatgttagctgctcat[C/G]aactaggactcaagga |
C |
G |
NM_022157 // intron // 0 // Hs.532461 // RRAGC // 64121 // Homo sapiens Ras-related GTP binding C (RRAGC), mRNA. /// ENST00000270814 // intron // 0 // --- // --- // --- // --- |
61.8761213568378 // D1S380 // D1S1598 // --- // --- /// 69.6957082379383 // D1S380 // D1S432 // UT499 // AFM214YC7 /// 62.5106671092443 // --- // D1S432 // 502862 // --- |
D1S432 // upstream // 54747 /// D1S1157 // downstream // 127132 |
274 // 38991206 // 38991479 |
SNP_A-1981699 |
rs10489156 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
20321208 |
+ |
0 |
p36.12 |
tatgatgaagtggtta[A/G]gatgagaaatttcaaa |
A |
G |
NM_152376 // downstream // 53361 // Hs.432503 // UBXD3 // 127733 // Homo sapiens UBX domain containing 3 (UBXD3), mRNA. /// NM_144623 // upstream // 83506 // Hs.205178 // FLJ32784 // 127731 // Homo sapiens hypothetical protein FLJ32784 (FLJ32784), mRNA. /// ENST00000294544 // downstream // 53361 // --- // --- // --- // --- /// ENST00000289815 // upstream // 41528 // --- // --- // --- // --- /// ENST00000289825 // upstream // 83506 // --- // --- // --- // --- |
38.9009288530859 // D1S199 // D1S2732 // --- // --- /// 46.1595395184685 // D1S199 // UNKNOWN // AFM078YG5 // ATA47D07 /// 40.9247635022198 // --- // --- // 44838 // 548760 |
D1S1442 // upstream // 26293 /// D1S2843 // downstream // 65522 |
846 // 20320531 // 20321376 |
SNP_A-2001334 |
rs513049 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
33876072 |
+ |
0 |
p35.1 |
gacacttggccatgga[C/G]gattgtttcactgact |
C |
G |
NM_052896 // intron // 0 // Hs.546470 // CSMD2 // 114784 // Homo sapiens CUB and Sushi multiple domains 2 (CSMD2), mRNA. /// ENST00000241312 // intron // 0 // --- // --- // --- // --- |
53.8930532880638 // D1S201 // D1S2783 // --- // --- /// 62.3595010543909 // D1S513 // D1S1190 // AFMA134XF9 // UT7270 /// 55.5677702702703 // D1S201 // --- // --- // 45044 |
D1S1538 // upstream // 80663 /// D1S2182 // downstream // 24822 |
857 // 33875659 // 33876515 |
SNP_A-2001454 |
rs3842834 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
33953211 |
- |
0 |
p35.1 |
aagcctttcttacctc[C/T]aaatgttgctaatagt |
C |
T |
NM_052896 // intron // 0 // Hs.546470 // CSMD2 // 114784 // Homo sapiens CUB and Sushi multiple domains 2 (CSMD2), mRNA. /// ENST00000241312 // intron // 0 // --- // --- // --- // --- |
54.1252374244504 // D1S201 // D1S2783 // --- // --- /// 62.4225377620059 // D1S513 // D1S1190 // AFMA134XF9 // UT7270 /// 55.638203981008 // D1S201 // --- // --- // 45044 |
D1S1538 // upstream // 3524 /// D1S2182 // downstream // 101961 |
607 // 33953019 // 33953625 |
SNP_A-2006054 |
rs3131671 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
40193783 |
+ |
0 |
p34.2 |
tgtgactatcctttgc[A/T]aattctaactttctac |
A |
T |
NM_006367 // intron // 0 // Hs.370581 // CAP1 // 10487 // Homo sapiens CAP, adenylate cyclase-associated protein 1 (yeast) (CAP1), mRNA. /// ENST00000340450 // intron // 0 // --- // --- // --- // --- |
63.9597695170952 // D1S1598 // D1S2706 // --- // --- /// 70.7196367644517 // D1S432 // D1S2706 // AFM214YC7 // AFMA337WC1 /// 63.4435952858834 // D1S432 // D1S2722 // --- // --- |
D1S1857E // upstream // 13694 /// D1S2572 // downstream // 5815 |
572 // 40193548 // 40194119 |
SNP_A-1988634 |
rs676643 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
23266646 |
+ |
0 |
p36.12 |
catcttgacgcatcct[A/G]agctacttaacttcgg |
A |
G |
NM_000864 // upstream // 628 // Hs.121482 // HTR1D // 3352 // Homo sapiens 5-hydroxytryptamine (serotonin) receptor 1D (HTR1D), mRNA. /// NM_005826 // downstream // 114937 // Hs.373763 // HNRPR // 10236 // Homo sapiens heterogeneous nuclear ribonucleoprotein R (HNRPR), mRNA. /// ENST00000314113 // upstream // 628 // --- // --- // --- // --- /// ENST00000302271 // downstream // 114937 // --- // --- // --- // --- |
42.7936947531298 // D1S458 // D1S2620 // --- // --- /// 51.6126479410843 // D1S1539 // D1S2620 // UT5123 // AFMA114YD5 /// 44.321583225155 // D1S2864 // D1S2838 // --- // --- |
D1S3597 // upstream // 165127 /// D1S2541 // downstream // 11800 |
1020 // 23266364 // 23267383 |
SNP_A-1987200 |
rs3767555 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
22659466 |
+ |
0 |
p36.12 |
ctgggctcttgtggta[C/G]ggcaagaggcacttca |
C |
G |
NM_020526 // intron // 0 // Hs.283613 // EPHA8 // 2046 // Homo sapiens EphA8 (EPHA8), mRNA. /// ENST00000166244 // intron // 0 // --- // --- // --- // --- |
41.2867259635072 // D1S2864 // D1S458 // --- // --- /// 49.6839724060323 // D1S1539 // D1S2620 // UT5123 // AFMA114YD5 /// 43.645803607474 // D1S2864 // D1S2838 // --- // --- |
D1S3273 // upstream // 51682 /// D1S512 // downstream // 2736 |
358 // 22659253 // 22659610 |
SNP_A-2003231 |
rs883805 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
36547117 |
+ |
0 |
p34.3 |
aagctgagaggtcttg[A/C]ggatatctagaaaact |
A |
C |
NM_032881 // upstream // 14531 // Hs.3496 // LSM10 // 84967 // Homo sapiens LSM10, U7 small nuclear RNA associated (LSM10), mRNA. /// NM_145047 // downstream // 5484 // Hs.202207 // NOR1 // 127700 // Homo sapiens oxidored-nitro domain-containing protein (NOR1), transcript variant 1, mRNA. /// NM_206837 // downstream // 15882 // Hs.202207 // NOR1 // 127700 // Homo sapiens oxidored-nitro domain-containing protein (NOR1), transcript variant 2, mRNA. /// ENST00000315732 // upstream // 14531 // --- // --- // --- // --- /// ENST00000235532 // downstream // 5483 // --- // --- // --- // --- /// ENST00000356637 // downstream // 5484 // --- // --- // --- // --- /// ENST00000315643 // downstream // 5716 // --- // --- // --- // --- /// ENST00000354267 // downstream // 15882 // --- // --- // --- // --- |
57.2189063228676 // D1S2656 // D1S472 // --- // --- /// 64.6537582831768 // D1S1190 // D1S2729 // UT7270 // AFMB037XF1 /// 57.2869351603789 // --- // D1S2729 // 45044 // --- |
D1S1416 // upstream // 101461 /// D1S1190 // downstream // 198782 |
466 // 36547046 // 36547511 |
SNP_A-2017468 |
rs17427125 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
5640863 |
- |
0 |
p36.31 |
gctttagcttgactac[G/T]ggagggctttggacta |
G |
T |
NM_018836 // downstream // 886640 // Hs.25924 // SHREW1 // 55966 // Homo sapiens transmembrane protein SHREW1 (SHREW1), mRNA. /// ENST00000359090 // downstream // 886640 // --- // --- // --- // --- /// ENST00000354985 // downstream // 886640 // --- // --- // --- // --- /// ENST00000253998 // downstream // 216274 // --- // --- // --- // --- |
9.32219566392969 // D1S2132 // D1S2633 // --- // --- /// 11.4511186700894 // UNKNOWN // D1S2633 // GATA68D01 // AFMA131YA5 /// 11.6451958742138 // D1S2660 // --- // --- // 609730 |
D1S2145 // upstream // 49305 /// D1S1371 // downstream // 94838 |
743 // 5640186 // 5640928 |
SNP_A-2135352 |
rs10492961 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
7572245 |
- |
0 |
p36.23 |
ttcaactatagttttg[A/G]aaatgatgatctaggc |
A |
G |
ENST00000303646 // intron // 0 // --- // --- // --- // --- /// ENST00000303635 // intron // 0 // --- // --- // --- // --- |
13.5849156157815 // D1S508 // D1S1612 // --- // --- /// 15.545800255884 // D1S2694 // D1S1612 // AFMA295YH5 // GGAA3A07 /// 14.222829367571 // --- // D1S1612 // 617931 // --- |
D1S2586 // upstream // 60700 /// D1S508 // downstream // 30596 |
433 // 7571980 // 7572412 |
Total number of rows: 267305
Table truncated, full table size 222252 Kbytes.
Supplementary data files not provided |
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