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GEO accession:
Sample GSM112404
Query DataSets for GSM112404
Status
Public on Sep 30, 2006
Title
NA07345_Nsp_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: A4
Biomaterial provider
Coriell NA07345
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA07345
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3811
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1825791
AA
0.039063
15.446
0.877495
1.000000
SNP_A-2222671
BB
0.187500
1.575
0.128358
0.306502
SNP_A-1879718
AB
0.039063
10.063
0.348535
0.276244
SNP_A-2192013
BB
0.007813
29.429
0.017442
0.015416
SNP_A-2161785
AA
0.015625
16.797
1.000000
0.979730
SNP_A-1924692
AB
0.023438
10.819
0.405280
0.281575
SNP_A-2059484
AA
0.007813
20.489
1.000000
0.991988
SNP_A-1921272
AB
0.007813
4.614
0.650617
0.410494
SNP_A-2045948
BB
0.039063
8.132
0.281046
0.077916
SNP_A-2024190
BB
0.007813
15.310
0.077933
0.000000
SNP_A-2166839
AA
0.007813
31.473
1.000000
1.000000
SNP_A-1999651
BB
0.007813
25.995
0.000000
0.000000
SNP_A-2049421
BB
0.007813
19.050
0.017659
0.000000
SNP_A-2220047
BB
0.007813
17.116
0.019342
0.085668
SNP_A-1916560
BB
0.007813
26.920
0.000000
0.000000
SNP_A-2094813
AB
0.007813
8.535
0.475609
0.504882
SNP_A-2190792
AA
0.132813
6.435
0.903414
0.720021
SNP_A-2033074
BB
0.023438
15.566
0.013433
0.156614
SNP_A-2131660
BB
0.007813
9.395
0.052632
0.022494
SNP_A-1780523
AB
0.039063
12.899
0.680063
0.665992
Total number of rows:
267231
Table truncated, full table size
13229 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112404.CEL.gz
43.0 Mb
(ftp)
(http)
CEL
GSM112404_raw.txt.gz
26.0 Mb
(ftp)
(http)
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