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GEO accession:
Sample GSM112494
Query DataSets for GSM112494
Status
Public on Sep 30, 2006
Title
NA10830_Nsp_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 6
Biomaterial provider
Coriell NA10830
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10830
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3811
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1825791
AB
0.007813
16.052
0.441774
0.449126
SNP_A-2222671
AA
0.023438
6.861
0.828306
0.967882
SNP_A-1879718
AB
0.015625
6.640
0.271762
0.317096
SNP_A-2192013
BB
0.007813
13.248
0.074536
0.003340
SNP_A-2161785
AB
0.265625
1.329
0.637906
0.239960
SNP_A-1924692
AB
0.007813
7.630
0.690083
0.514650
SNP_A-2059484
AB
0.062500
5.104
0.586111
0.712954
SNP_A-1921272
BB
0.007813
21.704
0.000000
0.000000
SNP_A-2045948
AB
0.015625
7.707
0.516484
0.333809
SNP_A-2024190
AA
0.015625
14.587
1.000000
1.000000
SNP_A-2166839
BB
0.007813
16.185
0.128788
0.000000
SNP_A-1999651
AB
0.132813
4.187
0.808140
0.404762
SNP_A-2049421
BB
0.023438
19.599
0.004336
0.000000
SNP_A-2220047
BB
0.007813
7.910
0.127341
0.092920
SNP_A-1916560
BB
0.007813
30.325
0.000000
0.007365
SNP_A-2094813
AB
0.007813
9.678
0.525470
0.486070
SNP_A-2190792
AB
0.015625
6.646
0.636745
0.591592
SNP_A-2033074
BB
0.039063
9.259
0.076563
0.230596
SNP_A-2131660
BB
0.382813
-2.255
0.404157
0.056680
SNP_A-1780523
AA
0.007813
25.500
1.000000
0.949306
Total number of rows:
267231
Table truncated, full table size
13211 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112494.CEL.gz
43.3 Mb
(ftp)
(http)
CEL
GSM112494_raw.txt.gz
26.2 Mb
(ftp)
(http)
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