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Sample GSM112495 Query DataSets for GSM112495
Status Public on Sep 30, 2006
Title NA10831_Nsp_EA
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Female Cell lot number: 5
Biomaterial provider Coriell NA10831 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10831
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 05, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3811
Series (1)
GSE5013 Global variation of copy number in the human genome_EA

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotype call
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1825791 AA 0.187500 4.328 0.829667 1.000000
SNP_A-2222671 AB 0.187500 5.753 0.233929 0.301904
SNP_A-1879718 AB 0.039063 9.553 0.353437 0.317756
SNP_A-2192013 BB 0.023438 12.837 0.046429 0.027244
SNP_A-2161785 AA 0.015625 8.110 0.975466 0.888268
SNP_A-1924692 AB 0.039063 5.362 0.426752 0.298068
SNP_A-2059484 BB 0.007813 15.534 0.000000 0.000000
SNP_A-1921272 AA 0.023438 20.641 1.000000 0.929710
SNP_A-2045948 BB 0.039063 6.861 0.095912 0.112042
SNP_A-2024190 BB 0.007813 8.465 0.146259 0.000000
SNP_A-2166839 AA 0.007813 16.276 0.976736 1.000000
SNP_A-1999651 BB 0.007813 16.075 0.000000 0.058757
SNP_A-2049421 BB 0.023438 14.697 0.138512 0.041832
SNP_A-2220047 AA 0.125000 8.151 0.996411 0.707763
SNP_A-1916560 AB 0.007813 17.224 0.443345 0.415425
SNP_A-2094813 AB 0.007813 8.719 0.471021 0.504760
SNP_A-2190792 AA 0.187500 4.449 0.863426 1.000000
SNP_A-2033074 BB 0.062500 15.441 0.020055 0.041625
SNP_A-2131660 BB 0.093750 11.485 0.482008 0.065081
SNP_A-1780523 AA 0.007813 13.395 1.000000 0.961413

Total number of rows: 267231

Table truncated, full table size 13192 Kbytes.




Supplementary file Size Download File type/resource
GSM112495.CEL.gz 44.9 Mb (ftp)(http) CEL
GSM112495_raw.txt.gz 27.5 Mb (ftp)(http) TXT

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