GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM112495
Query DataSets for GSM112495
Status
Public on Sep 30, 2006
Title
NA10831_Nsp_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 5
Biomaterial provider
Coriell NA10831
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10831
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3811
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1825791
AA
0.187500
4.328
0.829667
1.000000
SNP_A-2222671
AB
0.187500
5.753
0.233929
0.301904
SNP_A-1879718
AB
0.039063
9.553
0.353437
0.317756
SNP_A-2192013
BB
0.023438
12.837
0.046429
0.027244
SNP_A-2161785
AA
0.015625
8.110
0.975466
0.888268
SNP_A-1924692
AB
0.039063
5.362
0.426752
0.298068
SNP_A-2059484
BB
0.007813
15.534
0.000000
0.000000
SNP_A-1921272
AA
0.023438
20.641
1.000000
0.929710
SNP_A-2045948
BB
0.039063
6.861
0.095912
0.112042
SNP_A-2024190
BB
0.007813
8.465
0.146259
0.000000
SNP_A-2166839
AA
0.007813
16.276
0.976736
1.000000
SNP_A-1999651
BB
0.007813
16.075
0.000000
0.058757
SNP_A-2049421
BB
0.023438
14.697
0.138512
0.041832
SNP_A-2220047
AA
0.125000
8.151
0.996411
0.707763
SNP_A-1916560
AB
0.007813
17.224
0.443345
0.415425
SNP_A-2094813
AB
0.007813
8.719
0.471021
0.504760
SNP_A-2190792
AA
0.187500
4.449
0.863426
1.000000
SNP_A-2033074
BB
0.062500
15.441
0.020055
0.041625
SNP_A-2131660
BB
0.093750
11.485
0.482008
0.065081
SNP_A-1780523
AA
0.007813
13.395
1.000000
0.961413
Total number of rows:
267231
Table truncated, full table size
13192 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112495.CEL.gz
44.9 Mb
(ftp)
(http)
CEL
GSM112495_raw.txt.gz
27.5 Mb
(ftp)
(http)
TXT
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
