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GEO accession:
Sample GSM112502
Query DataSets for GSM112502
Status
Public on Sep 30, 2006
Title
NA10854_Nsp_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 2
Biomaterial provider
Coriell NA10854
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10854
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3811
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1825791
AA
0.093750
8.024
0.860169
0.939834
SNP_A-2222671
BB
0.250000
1.997
0.077093
0.204183
SNP_A-1879718
AB
0.015625
10.910
0.705028
0.630155
SNP_A-2192013
BB
0.007813
20.305
0.007669
0.003372
SNP_A-2161785
AA
0.015625
19.627
1.000000
0.960674
SNP_A-1924692
AA
0.007813
9.719
0.913939
0.859691
SNP_A-2059484
BB
0.539063
0.747
0.195082
0.369186
SNP_A-1921272
AB
0.460938
3.379
0.799769
0.632051
SNP_A-2045948
BB
0.007813
6.612
0.079670
0.102222
SNP_A-2024190
BB
0.007813
11.577
0.000000
0.039413
SNP_A-2166839
AA
0.007813
25.384
0.951236
0.998286
SNP_A-1999651
BB
0.023438
12.179
0.151042
0.051935
SNP_A-2049421
BB
0.007813
18.830
0.022154
0.000000
SNP_A-2220047
AB
0.359375
0.383
0.139610
0.313747
SNP_A-1916560
BB
0.007813
7.305
0.120296
0.118982
SNP_A-2094813
AB
0.007813
10.068
0.492472
0.494491
SNP_A-2190792
AA
0.250000
0.689
0.857438
0.739827
SNP_A-2033074
BB
0.039063
24.355
0.000000
0.127608
SNP_A-2131660
BB
0.007813
11.075
0.083721
0.035484
SNP_A-1780523
AA
0.007813
24.060
1.000000
0.964042
Total number of rows:
267231
Table truncated, full table size
13230 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112502.CEL.gz
43.0 Mb
(ftp)
(http)
CEL
GSM112502_raw.txt.gz
26.0 Mb
(ftp)
(http)
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