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GEO accession:
Sample GSM112552
Query DataSets for GSM112552
Status
Public on Sep 30, 2006
Title
NA12760_Nsp_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 1
Biomaterial provider
Coriell NA12760
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12760
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3811
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1825791
AB
0.007813
13.404
0.485294
0.431503
SNP_A-2222671
AA
0.023438
6.373
0.839678
0.869458
SNP_A-1879718
AA
0.015625
5.228
0.887409
0.820098
SNP_A-2192013
BB
0.007813
18.726
0.022006
0.000000
SNP_A-2161785
BB
0.015625
19.353
0.000000
0.005351
SNP_A-1924692
AB
0.007813
13.979
0.496617
0.493909
SNP_A-2059484
BB
0.007813
22.423
0.000000
0.000000
SNP_A-1921272
BB
0.007813
18.736
0.000000
0.062308
SNP_A-2045948
AB
0.007813
13.342
0.386316
0.401845
SNP_A-2024190
AB
0.453125
4.526
0.450927
0.068571
SNP_A-2166839
AA
0.007813
18.041
0.948784
1.000000
SNP_A-1999651
AB
0.007813
11.117
0.532110
0.406381
SNP_A-2049421
BB
0.187500
4.660
0.196131
0.166667
SNP_A-2220047
BB
0.007813
5.487
0.063650
0.162814
SNP_A-1916560
BB
0.007813
26.237
0.028409
0.060684
SNP_A-2094813
AB
0.007813
8.839
0.496971
0.512346
SNP_A-2190792
AB
0.023438
17.704
0.539966
0.498745
SNP_A-2033074
BB
0.007813
6.513
0.089865
0.140244
SNP_A-2131660
BB
0.132813
5.890
0.293165
0.017337
SNP_A-1780523
AA
0.007813
10.166
1.000000
0.923241
Total number of rows:
267231
Table truncated, full table size
13214 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112552.CEL.gz
44.1 Mb
(ftp)
(http)
CEL
GSM112552_raw.txt.gz
13.3 Mb
(ftp)
(http)
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