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GEO accession:
Sample GSM112614
Query DataSets for GSM112614
Status
Public on Sep 30, 2006
Title
NA18594_Nsp_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 2
Biomaterial provider
Coriell NA18594
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18594
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3811
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1825791
AA
0.023438
6.909
0.886845
0.979832
SNP_A-2222671
AB
0.007813
9.461
0.522561
0.554795
SNP_A-1879718
AB
0.023438
11.021
0.377554
0.270447
SNP_A-2192013
AB
0.007813
19.772
0.465187
0.465378
SNP_A-2161785
AA
0.015625
16.319
1.000000
0.950292
SNP_A-1924692
AB
0.007813
9.408
0.585948
0.508355
SNP_A-2059484
AB
0.007813
9.725
0.438650
0.592803
SNP_A-1921272
AA
0.007813
19.422
1.000000
1.000000
SNP_A-2045948
BB
0.062500
6.760
0.030398
0.110449
SNP_A-2024190
AB
0.265625
3.531
0.386827
0.155251
SNP_A-2166839
AA
0.007813
16.195
0.938283
1.000000
SNP_A-1999651
BB
0.007813
19.679
0.039735
0.024142
SNP_A-2049421
BB
0.023438
15.635
0.047991
0.000000
SNP_A-2220047
AB
0.023438
8.649
0.414861
0.401125
SNP_A-1916560
AB
0.007813
12.177
0.415493
0.428436
SNP_A-2094813
AB
0.007813
6.094
0.486347
0.516728
SNP_A-2190792
AA
0.265625
2.901
0.799234
0.948718
SNP_A-2033074
BB
0.382813
-0.828
0.076324
0.290569
SNP_A-2131660
AB
0.062500
6.193
0.601220
0.542157
SNP_A-1780523
AB
0.023438
14.832
0.633895
0.634357
Total number of rows:
267231
Table truncated, full table size
13205 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112614.CEL.gz
43.5 Mb
(ftp)
(http)
CEL
GSM112614_raw.txt.gz
26.4 Mb
(ftp)
(http)
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