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GEO accession:
Sample GSM112732
Query DataSets for GSM112732
Status
Public on Sep 30, 2006
Title
NA19159_Nsp_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 1
Biomaterial provider
Coriell NA19159
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA19159
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3811
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1825791
AA
0.007813
9.258
0.876683
0.944149
SNP_A-2222671
AA
0.039063
11.322
0.867725
0.931442
SNP_A-1879718
AB
0.015625
20.399
0.552098
0.527601
SNP_A-2192013
BB
0.007813
16.377
0.029779
0.028782
SNP_A-2161785
AA
0.078125
11.614
0.984245
0.929688
SNP_A-1924692
AB
0.007813
8.643
0.326017
0.311608
SNP_A-2059484
BB
0.007813
14.630
0.000000
0.000000
SNP_A-1921272
BB
0.007813
22.487
0.026316
0.000000
SNP_A-2045948
BB
0.046875
7.380
0.279661
0.092984
SNP_A-2024190
AA
0.187500
5.610
0.947248
0.882653
SNP_A-2166839
AB
0.039063
7.496
0.744569
0.714838
SNP_A-1999651
BB
0.023438
11.009
0.000000
0.096121
SNP_A-2049421
BB
0.007813
19.117
0.052003
0.039131
SNP_A-2220047
AB
0.015625
9.851
0.441938
0.424658
SNP_A-1916560
AA
0.007813
21.604
1.000000
0.956977
SNP_A-2094813
AB
0.007813
11.090
0.487277
0.469499
SNP_A-2190792
BB
0.078125
4.889
0.110792
0.219686
SNP_A-2033074
AB
0.007813
9.834
0.729284
0.526536
SNP_A-2131660
AA
0.007813
16.202
1.000000
1.000000
SNP_A-1780523
AB
0.007813
12.739
0.696721
0.615919
Total number of rows:
267231
Table truncated, full table size
13213 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112732.CEL.gz
43.4 Mb
(ftp)
(http)
CEL
GSM112732_raw.txt.gz
26.3 Mb
(ftp)
(http)
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