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GEO accession:
Sample GSM112763
Query DataSets for GSM112763
Status
Public on Sep 30, 2006
Title
NA07000_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 5
Biomaterial provider
Coriell NA07000
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA07000
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
BB
0.007813
9.109
0.084204
0.065562
SNP_A-2183388
AA
0.007813
29.172
1.000000
0.986121
SNP_A-1999657
BB
0.007813
25.229
0.125767
0.000000
SNP_A-2298105
BB
0.023438
6.279
0.068729
0.172083
SNP_A-1999647
AB
0.015625
17.574
0.523179
0.488227
SNP_A-2231588
AA
0.007813
13.808
0.967420
1.000000
SNP_A-1869885
AA
0.062500
16.903
1.000000
0.913838
SNP_A-2025428
AA
0.007813
13.721
0.936214
0.936090
SNP_A-1802236
AB
0.093750
9.093
0.837662
0.563690
SNP_A-2026297
BB
0.312500
1.838
0.155090
0.166467
SNP_A-1784073
AA
0.015625
4.420
0.845670
0.969631
SNP_A-1999656
BB
0.132813
2.520
0.108485
0.165611
SNP_A-1809045
BB
0.250000
0.948
0.165872
0.259367
SNP_A-2082354
AB
0.023438
11.740
0.645524
0.523529
SNP_A-2191778
BB
0.007813
26.390
0.007919
0.020528
SNP_A-2236359
BB
0.007813
12.444
0.085324
0.000000
SNP_A-2104498
BB
0.023438
3.660
0.000000
0.186740
SNP_A-2109914
AA
0.007813
16.602
1.000000
0.864780
SNP_A-2118217
AB
0.015625
11.554
0.542608
0.599557
SNP_A-2186627
BB
0.023438
5.957
0.202479
0.017308
Total number of rows:
267269
Table truncated, full table size
13211 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112763.CEL.gz
43.5 Mb
(ftp)
(http)
CEL
GSM112763_raw.txt.gz
26.4 Mb
(ftp)
(http)
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